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path: root/wqflask/base/data_set.py
AgeCommit message (Collapse)Author
2021-11-25Delete noisy loggingBonfaceKilz
2021-11-23resolve merge conflictsAlexander Kabui
2021-11-23pep8 formatting remove dead variablesAlexander Kabui
2021-11-17refactor sql query & date formattingAlexander Kabui
2021-11-17replace redis fetch for cached timestamp with a queryAlexander Kabui
2021-11-17isolate SQL_URI parse to a functionAlexander Kabui
2021-11-17use a dynamic value for the db_nameAlexander Kabui
2021-11-17temp disable query cachingAlexander Kabui
2021-11-16use comprehension list;fix typoAlexander Kabui
2021-11-16pep8 formatting remove debug statementsAlexander Kabui
2021-11-16test generate new filesAlexander Kabui
2021-11-16refactor:fix on the query :modify cache pointAlexander Kabui
2021-11-04check for null timestampAlexander Kabui
2021-11-04store table timestamp on redisAlexander Kabui
2021-11-04init function to get the table timestampAlexander Kabui
2021-11-04pep8 formatting ,minor fixesAlexander Kabui
2021-11-04generate filename hashAlexander Kabui
2021-11-04fetch cached resultsAlexander Kabui
2021-11-04function to cache sample resultsAlexander Kabui
2021-08-17Merge pull request #598 from zsloan/feature/add_filter_by_study_sampleszsloan
Feature/add filter by study samples
2021-08-13base: data_set: Remove unnecessary comments and logging statementsBonfaceKilz
2021-08-12Return empty list instead of None in get_study_samplelistszsloan
2021-08-12Fix the way the study_sample_lists path is set and checkedzsloan
2021-08-12add function for reading in JSON file that lists sample lists unique to each ↵zsloan
study within a group (in this case only BXD Longevity for now)
2021-06-17delete loggers and commentsAlexander Kabui
2021-06-17sort sample name by sample_idsAlexander Kabui
2021-06-17remove unused functions + minor fixesAlexander Kabui
2021-06-17minor fixAlexander Kabui
2021-06-17pep8 formattingAlexander Kabui
2021-06-17add query for fetching probeset dataAlexander Kabui
2021-06-16Added function as_dict to data_set.py for situations where we don't want to ↵zsloan
pass around the whole dataset object
2021-05-10Merge branch 'testing' into feature/integrate-correlation-apiAlexander Kabui
2021-05-10add previous endpoint for correlationAlexander Kabui
2021-04-30autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133BonfaceKilz
2021-04-30autopep8: Fix W504BonfaceKilz
2021-04-30autopep8: Fix E501BonfaceKilz
2021-04-30autopep8: Fix E301,E302,E303,E304,E305,E306BonfaceKilz
2021-04-30autopep8: Fix E20-E27BonfaceKilz
Run: python -m autopep8 --in-place --recrusive ./ --select\ E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,\ E242,E251,E252,E26,E265,E266,E27 -p 3
2021-04-29Run `sed -i 's/(object)//g'`BonfaceKilz
See: https://is.gd/pL7IJF Ran: find . \( -type d -name .git -prune \) -o -type f -print0 | xargs -0 sed -i 's/(object)//g'
2021-04-29base: data_set: Remove unused methodBonfaceKilz
* wqflask/base/data_set.py (Dataset.get_accession_id): Delete it.
2021-04-29base: data_set: Apply pep-8BonfaceKilz
2021-04-29base: data_set: Remove unused methodBonfaceKilz
* wqflask/base/data_set.py (riset): Delete class method.
2021-04-29base: data_set: Rewrite data_set using @dataclassBonfaceKilz
@dataclasses should be used to hold only data. Since dataset only encapsulates data, re-writing it using a dataclass makes it more readable and easier to follow.
2021-04-23debugging for fetching probe dataAlexander Kabui
2021-04-23Remove stale commentsBonfaceKilz
2021-02-11Removed some log statementszsloan
2020-10-12Merge branch 'testing' into build/python3-migrationBonfaceKilz
2020-10-08Fixed remaining issue that applies to all dataset typeszsloan
* wqflask/base/data_set.py - Fixed issue where there was an error when trying to take the len of the query results when there were no results
2020-10-08Fixed issue where new phenotype groups wouldn't be saved to the ↵zsloan
self.datasets property because the group name was used as the key (instead of the group name + "Publish", which is the full dataset name for phenotypes) * wqflask/base/data_set.py - Set "group_name" as a separate variable from "name" to avoid it being used as the key in self.datasets
2020-09-30Removed unused code from TempDataSet classzsloan
* wqflask/base/data_set.py - TempDataSet class contained some code referring to the SQL DB, but temp traits aren't stored in the SQL DB anymore
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-22 23:09:29 +0000