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chores/code-refactoring
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refactor-data_set_py-20220920
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data_set.py
Age
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Author
2013-06-13
Fixed issue where too much memory was used as a result of creating a
Lei Yan
2013-06-11
Put trait info for correlation results page into a dictionary instead
Lei Yan
2013-05-30
Rewrote some code in get_trait_info in dataset.py
Lei Yan
2013-05-28
Have correlation values appearing in a table in the template
Lei Yan
2013-05-23
Worked on rewriting the function in data_set.py that gets the sample
Lei Yan
2013-05-23
Changed the way the query that gets sample ids is generated
Lei Yan
2013-05-23
Now calculates correlation values for traits, but not yet in template
Lei Yan
2013-05-08
Worked on correlation page
Lei Yan
2013-04-09
Nick's code works fine with human data
Zachary Sloan
2013-04-05
Made changes to get pylmm code working with HMDP datasets
Zachary Sloan
2013-04-02
Committing before splitting code that runs pylmm with plink files
Zachary Sloan
2013-04-02
pylmm code is running for human data (plink .bed genotype files)
Zachary Sloan
2013-03-19
Searches work for the full access human datasets with mRNA assay
Zachary Sloan
2013-03-12
Got cashing working with pickle
Zachary Sloan
2013-03-07
Progress bar is now completely working
Zachary Sloan
2013-03-02
Created generate_probesetfreeze_file to create the
Zachary Sloan
2013-02-14
Have marker regression results displaying as a scatterplot (just the points)
Zachary Sloan
2013-02-13
Fixed some bugs related to getting the marker regression page working
Zachary Sloan
2013-02-12
Edited marker_regression.py and data_set.py to store the p-values
Zachary Sloan
2013-01-31
Changed fd to kw in search_results.py, commented out some lines
Zachary Sloan
2013-01-18
Renamed CorrelationPage.py to show_corr_results.py
Zachary Sloan
2013-01-03
Began working on marker_regression.py and created Chromosomes class
Zachary Sloan
2013-01-03
Created template for marek regression page and made the compute button direct
Zachary Sloan
2012-12-18
Created new file species.py and species class object TheSpecies
Zachary Sloan
2012-12-06
Added minimum/maximum to basic statistics table
Zachary Sloan
2012-12-06
Got show_trait running again for MrnaAssay traits
Zachary Sloan
2012-12-06
Made many small changes to show_trait/data_set/search_results/trait to
Zachary Sloan
2012-12-05
Renamed webqtlTrait.py to trait.py
Zachary Sloan
2012-12-05
Continued to make changes related to getting rid of cursor/db_conn
Zachary Sloan
2012-12-04
Changed parser to allow quotes (i.e. name="rw williams")
Zachary Sloan
2012-12-04
Began changing references to cursor/db_conn to use sqlalchemy
Zachary Sloan
2012-11-30
Added example of escaping strings now that trasitioning to simple SQLAlchemy
Zachary Sloan
2012-11-30
Started switching to using basic sqlalchemy to handle db connection/queries
Zachary Sloan
2012-11-29
Changed a number of variables (riset to group, db to dataset)
Zachary Sloan
2012-11-28
Made some small changes to get code working for genotype searches
Zachary Sloan
2012-11-27
Created subclass for each main data set type and moved the code
Zachary Sloan
2012-11-27
Renamed webqtlDataSet.py to data_set.py
Zachary Sloan
