genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2014-06-25	Added Karl's correlation matrix code	Zachary Sloan
2014-06-06	Implimented Karl Broman's lodchart code for the interval mapping function.	Zachary Sloan
2014-05-05	Committing a bunch of changes related to integrating GEMMA and	Zachary Sloan
2014-01-30	Most of the work is done towards running lmm.py from the command line	Zachary Sloan
2014-01-29	Limited number of markers in marker regression result table to	Zachary Sloan
2014-01-23	Histogram is working	Zachary Sloan
2014-01-03	Wrote some code for the histogram figure	Zachary Sloan
2013-11-26	Made some progress towards getting the traits inside a collection to display ...	Zachary Sloan
2013-11-25	Got the interval mapping results into a table	Zachary Sloan
2013-10-25	Began working on color coding bar chart by extra attributes	Zachary Sloan
2013-10-15	Changed templates to call the header macro	Zachary Sloan
2013-10-11	Merge /home/lei/gene	Zachary Sloan
2013-10-10	Almost have correlation working for non-primary strain/group	Lei Yan
2013-10-09	Improved some of the code related to the correlation page	Lei Yan
2013-10-08	Literature correlation works when it is selected as the sorted	Lei Yan
2013-10-08	Did some work with interval mapping page; will use qtl reaper to do	Zachary Sloan
2013-09-24	Did some work towards doing the tissue correlation for all traits	root
2013-08-21	Just removed a couple print statements	Zachary Sloan
2013-08-15	Removed the markers with no variance (and thus no p-values) from the	Zachary Sloan
2013-08-13	Added several test files and the file with the class that	Zachary Sloan
2013-08-07	Fixed things with the dataset dropdowns and mRNA datasets	Zachary Sloan
2013-08-02	Fixed a bug related to groups with genofiles (not sure if it makes sense	Zachary Sloan
2013-07-30	Just added some print statements to debug an issue with LMM code	Zachary Sloan
2013-07-23	Fixed a couple issues with he quick_search_table.py script	Zachary Sloan
2013-07-19	Finished integrating code that reads sample list from geno files	Zachary Sloan
2013-07-19	Created file gen_group_samplelists that iterates through all genofiles	Zachary Sloan
2013-07-16	Wrote code that can get a dataset's type for every single GN	Zachary Sloan
2013-06-27	Created a group manager page where user administrators can create	Zachary Sloan
2013-06-26	Moved code creating DataSets object to a function in dataset.py	Zachary Sloan
2013-06-26	Got code that creates DataSets object running	Zachary Sloan
2013-06-25	Added DataSets class to dataset.py that will be used to create list of	Zachary Sloan
2013-06-21	Fixed bug where cursor was still being used in query	Zachary Sloan
2013-06-19	Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask	Zachary Sloan
2013-06-13	Fixed issue where too much memory was used as a result of creating a	Lei Yan
2013-06-12	Fixed a couple issues with the template that caused the	Zachary Sloan
2013-06-11	Put trait info for correlation results page into a dictionary instead	Lei Yan
2013-05-30	Rewrote some code in get_trait_info in dataset.py	Lei Yan
2013-05-28	Have correlation values appearing in a table in the template	Lei Yan
2013-05-23	Worked on rewriting the function in data_set.py that gets the sample	Lei Yan
2013-05-23	Changed the way the query that gets sample ids is generated	Lei Yan
2013-05-23	Now calculates correlation values for traits, but not yet in template	Lei Yan
2013-05-09	Just added some print statements so I can show matrix/vector	Zachary Sloan
2013-05-08	Worked on correlation page	Lei Yan
2013-04-09	Nick's code works fine with human data	Zachary Sloan
2013-04-05	Made changes to get pylmm code working with HMDP datasets	Zachary Sloan
2013-04-02	Committing before splitting code that runs pylmm with plink files	Zachary Sloan
2013-04-02	pylmm code is running for human data (plink .bed genotype files)	Zachary Sloan
2013-03-19	Searches work for the full access human datasets with mRNA assay	Zachary Sloan
2013-03-12	Got cashing working with pickle	Zachary Sloan
2013-03-07	Progress bar is now completely working	Zachary Sloan