| Age | Commit message (Expand) | Author |
|---|
| 2018-04-06 | Mapping figure output now gives more accurate information...Committing partway through removing a bunch of unused code/files just in case something necessary gets removed
| zsloan |
| 2017-12-20 | Bring in some earlier work - mostly documentation and startup handling | Pjotr Prins |
| 2017-11-06 | Replaced Histogram and Bar Chart with Plotly version and added new Box Plot w......GEMMA now has option to select genotypes
Updated dataset select dropdowns to be ordered correctly
Fixed dataset select dropdowns for correlations to not show confidential datasets
Added Skewness and Kurtosis to Basic Statistics table
Fixed Verify and RNA-seq buttons on trait page
Temporarily hardcoded Reference page until we get it to link with database
| zsloan |
| 2017-06-09 | - Changed the way the genofile is set so different genofiles can be selected ......- Now shows error page for Correlation Matrix if traits aren't all from the same group (later need to make it check for shared samples, since different groups may contain some of the same samples
- Mapping results page now displays the genofile in the information section
- Only show Interval Analyst if species is mouse or rat (previously it would show a blank table for other species)
- Network Graph now only shows links in a node's info if the relevant information (for example geneid) exists, and the label changes depending on the type of data set
- Other minor changes to the appearance of the Network Graph menu (less white space, plus clickable descriptions for a couple options)
- Improved Correlations Results page to shorten Description and Authors cell content for Phenotype traits (to keep table width manageable)
- Changed the glossary links for LRS and Additive Effect columns for Gene Global Search
- Improved appearance for Phenotype Global Search results
- Temporarily removed Mapping options/features that don't work from the trait page
| zsloan |
| 2017-04-17 | Added option to remove collections from collection list page...Improved appearance of search result and collection tables
| zsloan |
| 2017-04-05 | - Temporary traits can be created, viewed, and added to collections...- Correct PCA trait data is created but can't be saved yet
- Added inner margins by increasing xDomain and yDomain of probability plot on trait page
- Increased X/Y-axis label font size
- Turned "processes" to 0 on runserver.py for PROD setting, since it doesn't work with threading
- Improved appearance of correlation page table
- Added links to github to index page
- Removed js_data from GEMMA/PLINK mapping results, since it isn't used for those
- Removed "Tissue" from trait page for phenotype traits
| zsloan |
| 2017-02-09 | Fixed issue where I forgot to add GeneticType to the query_for_group query fo......Increased digits of some Basic Statistics values from 2 to 3
| zsloan |
| 2017-02-09 | Added genetic_type to DatasetGroup object to differentiate between which grou......Minor changes/improvements for trait page
Updated dataset_menu_structure.json
| zsloan |
| 2017-02-06 | Merge branch 'master' of github.com:zsloan/genenetwork2 | zsloan |
| 2017-02-06 | Fixed appearance of several tables (search, mapping results, sample data)...Temporarily removed second sample table for CFW traits
Fixed location of global search bar to work with wider screens
| zsloan |
| 2017-01-26 | Merge pull request #1 from genenetwork/testing...Various changes/fixes | zsloan |
| 2017-01-26 | GEMMA now works with CFW data (had to update where it looks for the input fil......Y-axis for GEMMA now says -log(p)
Updated the style of the trait sample data table in the trait page
Updated dataset_select_menu_orig.js to also build just the Species and Group drop-downs for the trait input page (as opposed to all 4 drop-downs)
Updated dataset menu json file
Added option to show and hide columns to regular search page using colVis
Changed regular and global search result table styles/column widths
Began work on user trait submission code (not working yet though)
Began work on static loading page for mapping results
| zsloan |
| 2016-12-15 | Merge pull request #234 from zsloan/master...Various changes | zsloan |
| 2016-11-18 | Fix sql error: (GeneNetwork error: (_mysql_exceptions.OperationalError) (1054... | Lei Yan |
| 2016-11-02 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into development | zsloan |
| 2016-11-02 | Added Scroller functionality to regular (but not global) search, which increa......In order to implement Scroller (and make table look nicer), all rows are the same height and excess description/authors text is shown in a tooltip
Increased table width for non-Geno DBs
Fixed issue where Genotype traits did not fetch their location_repr (text for displaying location), causing that column to be blank in searches
Fixed issue causing Correlation Matrix cells to not be colored corresponding with their correlation and also increased cell font a little
Fixed issue where dataset link in the Correlation Page did not correctly point to corresponding GN1 page
| zsloan |
| 2016-10-29 | For those case that we have multiple genotypes we would like to add a selector. | Lei Yan |
| 2016-10-06 | Logger: add more granular debug messages | Pjotr Prins |
| 2016-10-05 | Show datasets only on debug | Pjotr Prins |
| 2016-09-13 | Run scripts from ./wqflask - just like the webserver | Pjotr Prins |
| 2016-09-10 | Support for running maintenance scripts so they can pick up all webserver set......Run with
./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
| Pjotr Prins |
| 2016-07-27 | Problem with phenotype traits should be fixed now | zsloan |
| 2016-06-26 | gn_server: simplify | Pjotr Prins |
| 2016-06-26 | gn_server: simplify | Pjotr Prins |
| 2016-06-26 | gn_server: introduced one new query to fetch a dataset record and force fetch... | Pjotr Prins |
| 2016-06-24 | Log: and document SQL calls | Pjotr Prins |
| 2016-06-23 | Logger: SQL | Pjotr Prins |
| 2016-06-23 | Log: SQL queries | Pjotr Prins |
| 2016-06-23 | Add fetchall iterator | Pjotr Prins |
| 2016-06-23 | Removed dependency on dataset_menu_structure.json | Pjotr Prins |
| 2016-06-23 | Backend: moved methods into call module | Pjotr Prins |
| 2016-06-23 | Refactored dir name dbFunction to db | Pjotr Prins |
| 2016-06-18 | Logger: replacing print statements | Pjotr Prins |
| 2016-05-23 | Reaper mapping results are now correct and account for samples with two names......R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues.
| zsloan |
| 2016-04-29 | Merge | Pjotr Prins |
| 2016-04-28 | Added option to export permutation results for mapping page...Added data_scale to dataset objects and basic stats table will now check data scale when calculating range
Made interval analyst results table work with datatables
Changed the appearance of the basic stats table some by giving it a border
| zsloan |
| 2016-04-20 | -a...[PATCH 039/100] Removing commented code
| Pjotr Prins |
| 2016-04-20 | -a...[PATCH 038/100] Fix compile errors
| Pjotr Prins |
| 2016-04-20 | [PATCH 037/100] WebQtlConfig: sanitizing naming and used vars | Pjotr Prins |
| 2016-04-20 | [PATCH 033/100] Refactored file searching | Pjotr Prins |
| 2016-04-20 | [PATCH 032/100] file locating: error checking is built-in | Pjotr Prins |
| 2016-04-20 | [PATCH 024/100] Sanitizing file handling | Pjotr Prins |
| 2016-04-20 | [PATCH 023/100] WIP fixing all paths | Pjotr Prins |
| 2016-03-18 | Replaced header with other information in qtl map...Began adding menu to qtl map
Fixed global search to not retrieve samples (to increase speed)
Got the vector plot working again so it can be displayed alongside the gn1-style plot
Only display the vector plot when doing GEMMA to speed up (this might not be necessary)
| zsloan |
| 2016-03-15 | Fixed the mapping figure track that lets you zoom into a smaller range...Fixed the third party mapping figure tracks to refer to the correct chromosome (before it was always 1)
| zsloan |
| 2016-03-02 | Increased gsearch speed by removing unnecessary query for sample data...Still slower than preferable due to having to query the gn1 database for every trait in the search results
| zsloan |
| 2016-02-04 | Most importantly, this commit fixes an issue that caused the trait page to no......An Intro section is also added to the header, though for the time being its contents aren't populated and the edit option isn't working
| zsloan |
| 2015-11-09 | Fixed issue that caused mapping to not work; for some reason the path to pylm... | zsloan |
| 2015-10-12 | Changed the location filter for correlation page | zsloan |
| 2015-09-11 | Comment out some excessive stdout spam | DannyArends |
