Age | Commit message (Expand) | Author |
2021-11-04 | check for null timestamp | Alexander Kabui |
2021-11-04 | store table timestamp on redis | Alexander Kabui |
2021-11-04 | init function to get the table timestamp | Alexander Kabui |
2021-11-04 | pep8 formatting ,minor fixes | Alexander Kabui |
2021-11-04 | generate filename hash | Alexander Kabui |
2021-11-04 | fetch cached results | Alexander Kabui |
2021-11-04 | function to cache sample results | Alexander Kabui |
2021-08-17 | Merge pull request #598 from zsloan/feature/add_filter_by_study_samples...Feature/add filter by study samples | zsloan |
2021-08-13 | base: data_set: Remove unnecessary comments and logging statements | BonfaceKilz |
2021-08-12 | Return empty list instead of None in get_study_samplelists | zsloan |
2021-08-12 | Fix the way the study_sample_lists path is set and checked | zsloan |
2021-08-12 | add function for reading in JSON file that lists sample lists unique to each ... | zsloan |
2021-06-17 | delete loggers and comments | Alexander Kabui |
2021-06-17 | sort sample name by sample_ids | Alexander Kabui |
2021-06-17 | remove unused functions + minor fixes | Alexander Kabui |
2021-06-17 | minor fix | Alexander Kabui |
2021-06-17 | pep8 formatting | Alexander Kabui |
2021-06-17 | add query for fetching probeset data | Alexander Kabui |
2021-06-16 | Added function as_dict to data_set.py for situations where we don't want to p... | zsloan |
2021-05-10 | Merge branch 'testing' into feature/integrate-correlation-api | Alexander Kabui |
2021-05-10 | add previous endpoint for correlation | Alexander Kabui |
2021-04-30 | autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133 | BonfaceKilz |
2021-04-30 | autopep8: Fix W504 | BonfaceKilz |
2021-04-30 | autopep8: Fix E501 | BonfaceKilz |
2021-04-30 | autopep8: Fix E301,E302,E303,E304,E305,E306 | BonfaceKilz |
2021-04-30 | autopep8: Fix E20-E27...Run:
python -m autopep8 --in-place --recrusive ./ --select\
E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,\
E242,E251,E252,E26,E265,E266,E27 -p 3
| BonfaceKilz |
2021-04-29 | Run `sed -i 's/(object)//g'`...See: https://is.gd/pL7IJF
Ran:
find . \( -type d -name .git -prune \) -o -type f -print0 | xargs -0 sed -i 's/(object)//g'
| BonfaceKilz |
2021-04-29 | base: data_set: Remove unused method...* wqflask/base/data_set.py (Dataset.get_accession_id): Delete it.
| BonfaceKilz |
2021-04-29 | base: data_set: Apply pep-8 | BonfaceKilz |
2021-04-29 | base: data_set: Remove unused method...* wqflask/base/data_set.py (riset): Delete class method.
| BonfaceKilz |
2021-04-29 | base: data_set: Rewrite data_set using @dataclass...@dataclasses should be used to hold only data. Since dataset only
encapsulates data, re-writing it using a dataclass makes it more
readable and easier to follow.
| BonfaceKilz |
2021-04-23 | debugging for fetching probe data | Alexander Kabui |
2021-04-23 | Remove stale comments | BonfaceKilz |
2021-02-11 | Removed some log statements | zsloan |
2020-10-12 | Merge branch 'testing' into build/python3-migration | BonfaceKilz |
2020-10-08 | Fixed remaining issue that applies to all dataset types...* wqflask/base/data_set.py - Fixed issue where there was an error when trying to take the len of the query results when there were no results
| zsloan |
2020-10-08 | Fixed issue where new phenotype groups wouldn't be saved to the self.datasets......* wqflask/base/data_set.py - Set "group_name" as a separate variable from "name" to avoid it being used as the key in self.datasets
| zsloan |
2020-09-30 | Removed unused code from TempDataSet class...* wqflask/base/data_set.py - TempDataSet class contained some code
referring to the SQL DB, but temp traits aren't stored in the SQL DB anymore
| zsloan |
2020-08-28 | Merge branch 'testing' into build/python3-migration | BonfaceKilz |
2020-08-27 | Remove redundant methods which are defined elsewhere...* wqflask/base/data_set.py: Delete "create_in_clause", and "mescape" which are
defined in "utility.db_tools"
| BonfaceKilz |
2020-08-27 | Replace "string.split" & "string.join" with python's inbuilt methods | BonfaceKilz |
2020-08-26 | Remove "from __future__ import new_feature" statements...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-future>
| BonfaceKilz |
2020-08-26 | Rename "unicode" to "str"...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-unicode>
| BonfaceKilz |
2020-08-25 | Fixed issue in DatasetType that caused an error when trying to load new...datasets
* wqflask/base/data_set.py - Added fetchone() to g.db.execute() which is
what was causing the error
| zsloan |
2020-08-20 | Handle module renames in the standard library...Run:
```
2to3-3.8 -f imports -w . && \
2to3-3.8 -f imports2 -w .
```
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-imports> and
<https://docs.python.org/2/library/2to3.html#2to3fixer-imports2>
| BonfaceKilz |
2020-08-20 | Disable python2 QTLReaper...* wqflask/base/data_set.py: Remove usage of "reaper" to load datasets
| BonfaceKilz |
2020-08-19 | Make Python more idiomatic...Run `2to3-3.8 -f idioms -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-idioms>
| BonfaceKilz |
2020-08-19 | Replace `izip` with python's built-in equivalent...Run `2to3-3.8 -f itertools -w . && 2to3-3.8 -f itertools_imports -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-itertools_imports>
and <https://docs.python.org/2/library/2to3.html#2to3fixer-itertools>
| BonfaceKilz |
2020-07-27 | Abstract away redundant code into set_dataset_key method...* wqflask/base/data_set.py (Dataset):
- Add set_dataset_key
- Remove __call__ method
| BonfaceKilz |
2020-07-27 | Use the correct redis instance inside object...* wqflask/base/data_set.py (DatasetType): Use object's redis instance
| BonfaceKilz |