| Age | Commit message (Expand) | Author |
|---|---|---|
| 2023-03-08 | Add DataAnalyzer.py script to maintenance scripts | zsloan |
| 2023-02-03 | Add perf scripts that compare fetching a trait using GN API vs LMDB...* scripts/performance/(README,org, timeit_gn2.py, timeit_lmdb.py): New files. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-01-26 | Dump metadata in addition to sample data....* scripts/sampledata: Dump metadata in addition to data. | Munyoki Kilyungi |
| 2023-01-20 | Make dump script faster by using concurrency module | Munyoki Kilyungi |
| 2023-01-20 | Dump all sample data into a given directory...* scripts/sampledata.py: Import gen_dropdown_json. (main): Dump all the sample data from all the datasets into a given directory. | Munyoki Kilyungi |
| 2023-01-20 | Return a trait's display name if the name is non-existent...* scripts/sampledata.py (fetch_all_traits): Should the name of a trait not exists, e.g. in probeset data, return it's display name. | Munyoki Kilyungi |
| 2023-01-20 | Update demo to dump entire dataset for BXDPublish...* scripts/sampledata.py: Import os and sys. <__name__>: Add demo to dump "BXDPublish" dataset. | Munyoki Kilyungi |
| 2023-01-20 | Remove hard-coded values...* scripts/sampledata.py (dump_sample_data): Remove hard-coded values for trait_id and dataset_name. | Munyoki Kilyungi |
| 2023-01-20 | Fix typo | Munyoki Kilyungi |
| 2023-01-20 | Add example that demos dumping data from an entire dataset | Munyoki Kilyungi |
| 2023-01-20 | Add a function that fetches all the traits given the right params...* scripts/sampledata.py (fetch_all_traits): New function. | Munyoki Kilyungi |
| 2023-01-20 | Create script to dumple sample data given the dataset and trait id...* scripts/sampledata.py: New file. | Munyoki Kilyungi |
| 2022-06-03 | Give speciesid single quotes like the other config_dic keys, just for consist... | zsloan |
| 2022-06-03 | Allow GenoFreezeId to be passed in configurations to load_genotypes.py | zsloan |
| 2022-03-11 | Add updated version of script for adding new expression sample data | zsloan |
| 2022-03-10 | Use context manager with database connection...Use the `with` context manager with database connections and cursors to ensure that they are closed once they are no longer needed. Where it was not feasible to use the `with` context manager without a huge refactor/rewrite, the cursors and connections are closed manually. | Frederick Muriuki Muriithi |
| 2021-12-17 | Some updates to the DOL genotypes conversion script | zsloan |
| 2021-11-05 | Add created_timestamp when creating a new group | BonfaceKilz |
| 2021-11-05 | Add created_timestamp when creating a new group | BonfaceKilz |
| 2021-11-05 | Use members uuid | BonfaceKilz |
| 2021-11-05 | Add script for manually adding "editors" to each resource | BonfaceKilz |
| 2021-10-25 | scripts: resource: Add value for "admin" when updating resources | BonfaceKilz |
| 2021-10-25 | scripts: resource.py: Add shebang | BonfaceKilz |
| 2021-10-25 | scripts: group.py: Add extra optional arg to specify uid | BonfaceKilz |
| 2021-10-25 | scripts: group.py: Add shebang | BonfaceKilz |
| 2021-10-22 | Include the admin privilege for the 'editors' group, since it wasn't being se... | zsloan |
| 2021-10-08 | Fixed the sort to account for both chr and pos in a kind of hack-y way + adde... | zsloan |
| 2021-10-08 | Adding convert_dol_genotypes.py to scripts; everything is hard-coded in it si... | zsloan |
| 2021-10-06 | scripts: resource: Add option for specifying a groups uuid | BonfaceKilz |
| 2021-10-06 | scripts: group: Replace args.group_name with data["field"] | BonfaceKilz |
| 2021-10-06 | scripts: group: Update docstrings for "create_group_data" | BonfaceKilz |
| 2021-10-06 | scripts: group: Break up long line | BonfaceKilz |
| 2021-10-06 | scripts: group: Fix indentation | BonfaceKilz |
| 2021-10-06 | scripts: group: Remove empty `""` value for data.get...data.get("field") will default to None if there is no value; and None is falsy. | BonfaceKilz |
| 2021-10-06 | scripts: group: Remove unused import | BonfaceKilz |
| 2021-10-06 | scripts: group: Use a unique key to identify a group | BonfaceKilz |
| 2021-10-04 | Moved REDIS_CONN back into if __name__ == '__main__' since it doesn't need to... | zsloan |
| 2021-10-04 | Changed the group.py script to replace user e-mails with IDs and to include i... | zsloan |
| 2021-10-04 | scripts: group.py: Modify exit message when displaying updated data | BonfaceKilz |
| 2021-10-04 | scripts: group.py: Remove "glom" dependency | BonfaceKilz |
| 2021-10-04 | Decode redis response by default | BonfaceKilz |
| 2021-10-04 | Modify resource editing script to enable data backups & restoration | BonfaceKilz |
| 2021-10-04 | Add script that adds "editors" group to all resources in Redis | BonfaceKilz |
| 2021-10-04 | Add script for creating/ updating groups during authorisation | BonfaceKilz |
| 2021-08-16 | Add "Description" column to CaseAttribute...See: eecaad2d | BonfaceKilz |
| 2021-05-13 | Fix load_phenotypes to run with GN2 latest | Arthur Centeno |
| 2020-10-29 | Replace map on strip with a list comprehension that calls strip()...* scripts/maintenance/readProbeSetSE_v7.py: In Python3 you can't map string.strip on a list of strings. Instead use a list comprehension and apply strip() on each element of the list. * wqflask/wqflask/marker_regression/plink_mapping.py: Ditto. * wqflask/wqflask/snp_browser/snp_browser.py: Ditto. | BonfaceKilz |
| 2020-08-27 | Replace "string.split" & "string.join" with python's inbuilt methods | BonfaceKilz |
| 2020-08-26 | Replace tabs with spaces...* scripts/maintenance/readProbeSetMean_v7.py: Run python-autopep8 on this file. | BonfaceKilz |
| 2020-08-19 | Remove extra whitespace(or add it) from comma separated items...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-urllib> | BonfaceKilz |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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