genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2013-02-21	Adding genotypes and new_genotypes (json files) directories to git	Zachary Sloan
	so they can be pulled to the new EC2 server
2013-01-31	Deleted nginx.conf from the other_conf directory not in wqflask	Zachary Sloan

2013-01-25	Added a bunch of things to notes	Zachary Sloan

2013-01-24	Added a lot to the notes in the process of setting up on the	Zachary Sloan
	new server
2013-01-23	Added a bunch to notes and created new notes file specifically	Zachary Sloan
	related to installing a new instance of GN
2013-01-22	Added a couple things to notes regarding installing mysql client	Zachary Sloan

2013-01-18	Renamed CorrelationPage.py to show_corr_results.py	Zachary Sloan
	Worked with correlation code; got to the code that begins to do the actual correlations Created a function "get_dataset_and_trait" in the new file "helper_functions.py" because the code initializing the dataset and trait objects was repeated in multiple places
2013-01-11	Overwrote requirements.txt	Zachary Sloan

2013-01-04	Correct results are being returned from reaper for the marker regression page	Zachary Sloan

2012-12-05	Renamed webqtlTrait.py to trait.py	Zachary Sloan
	Renamed webqtlTrait class to GeneralTrait Began process of removing fd from show_trait.py Created DatasetGroup object in data_set.py (this may end up becoming its own file later if it becomes big enough)
2012-12-05	Continued to make changes related to getting rid of cursor/db_conn	Zachary Sloan
	and using simple sqlalchemy Got Pheno/MrnaAssay dataset searches working again
2012-11-30	Got searches working for RANGE and MEAN commands	Zachary Sloan
	Created a file where renamed variables will be listed for future reference
2012-11-21	Changed parser to allow for bother square brackets and parentheses	Zachary Sloan
	Changed show_trait.coffee to get the stats table working again Still need to get stats table to work with changed values
2012-11-01	Began integrating do_search.py's DoSearch object into search_results.py,	Zachary Sloan
	with simple searches returning correct results Still need to make results display in the table Sam also did some work with the bootstrap styling
2012-10-25	Created header and set defaults for the search dropdown options	Zachary Sloan

2012-10-23	Finished coffeescript that handles the home page dataset selection dropdowns	Zachary Sloan

2012-10-19	Finished gen_select_dataset.py which generates the json file that defines the	Zachary Sloan
	data structure used for the index page select dropdowns
2012-10-09	Used tidyp to improve/beautify index_page.html	Zachary Sloan

2012-09-25	Fixed issue with parent strains appearing twice and began replacing variable ↵	Zachary Sloan
	names (strain -> sample, for example)
2012-09-19	Created correlation page template file, changed the form value name for ↵	Zachary Sloan
	pearson/spearman option, and put fd in CorrelationPage.py as self.__dict__
2012-09-13	Worked on improving readData and informativeStrains functions in ↵	Zachary Sloan
	webqtlFormData while trying to get correlation page running
2012-09-12	Worked towards correctly passing form data to correlation page and addressed ↵	Zachary Sloan
	various bugs that arose while doing so
2012-08-28	Various changes related to the webqtlCaseData object and the way ↵	Zachary Sloan
	values/variances/num_cases are called in DataEditingPage.py
2012-08-24	Got the show/hide outliers button working and began fixing the issue where ↵	Zachary Sloan
	parents appeared twice in the strain list
2012-08-23	Made some minor changes to trait data and analysis page template	Zachary Sloan