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2013-06-19Merge branch 'flask' of git://github.com/zsloan/genenetwork into flask...Conflicts: wqflask/base/data_set.py Lei Yan
2013-06-11Put trait info for correlation results page into a dictionary instead...of storing list of GeneralTrait objects Added print statements to track memory usage Lei Yan
2013-05-08Merge branch 'flask' of git://github.com/leiyan/genenetwork into flaskZachary Sloan
2013-05-08Worked on correlation page...Wrote function in dataset.py that gets all the traits in a dataset and their sample values Lei Yan
2013-04-24Began writing code that writes some objects used in LMM to redis...and writes/reads eachitem in the plink_input Zachary Sloan
2013-04-23Created file correlation_plot.py for the correlation scatterplot...Reverted temp_data.py to previous version that doesn't include the "part" input (for chunks) Made change to lmm related to splitting main iterator into chunks Deleted a bunch of unnecessary commented out code from show_trait.py Zachary Sloan
2013-04-18LMM code now reads in gzipped pickled plink snp iterator objectZachary Sloan
2013-04-18input file is now loaded by pickleZachary Sloan
2013-03-22Added secure_server.py...Updated notes.txt Zachary Sloan
2013-03-22Removed zach_settings.py from git tracking...Changed mysql password as a result of it being up on git before Zachary Sloan
2013-03-13Added some to notesZachary Sloan
2013-03-05Implemented DataTables; there are now options to download the marker...regression result table in various formats Zachary Sloan
2013-02-22Added some to notesZachary Sloan
2013-02-21Adding genotypes and new_genotypes (json files) directories to git...so they can be pulled to the new EC2 server Zachary Sloan
2013-01-31Deleted nginx.conf from the other_conf directory not in wqflaskZachary Sloan
2013-01-25Added a bunch of things to notesZachary Sloan
2013-01-24Added a lot to the notes in the process of setting up on the...new server Zachary Sloan
2013-01-23Added a bunch to notes and created new notes file specifically...related to installing a new instance of GN Zachary Sloan
2013-01-22Added a couple things to notes regarding installing mysql clientZachary Sloan
2013-01-18Renamed CorrelationPage.py to show_corr_results.py...Worked with correlation code; got to the code that begins to do the actual correlations Created a function "get_dataset_and_trait" in the new file "helper_functions.py" because the code initializing the dataset and trait objects was repeated in multiple places Zachary Sloan
2013-01-11Overwrote requirements.txtZachary Sloan
2013-01-04Correct results are being returned from reaper for the marker regression pageZachary Sloan
2012-12-05Renamed webqtlTrait.py to trait.py...Renamed webqtlTrait class to GeneralTrait Began process of removing fd from show_trait.py Created DatasetGroup object in data_set.py (this may end up becoming its own file later if it becomes big enough) Zachary Sloan
2012-11-21Changed parser to allow for bother square brackets and parentheses...Changed show_trait.coffee to get the stats table working again Still need to get stats table to work with changed values Zachary Sloan
2012-11-01Began integrating do_search.py's DoSearch object into search_results.py,...with simple searches returning correct results Still need to make results display in the table Sam also did some work with the bootstrap styling Zachary Sloan
2012-10-23Finished coffeescript that handles the home page dataset selection dropdownsZachary Sloan
2012-10-19Finished gen_select_dataset.py which generates the json file that defines the...data structure used for the index page select dropdowns Zachary Sloan
2012-10-09Used tidyp to improve/beautify index_page.htmlZachary Sloan
2012-09-25Fixed issue with parent strains appearing twice and began replacing variable ...Zachary Sloan
2012-09-13Worked on improving readData and informativeStrains functions in webqtlFormDa...Zachary Sloan
2012-09-12Worked towards correctly passing form data to correlation page and addressed ...Zachary Sloan