genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2013-06-11	Put trait info for correlation results page into a dictionary instead	Lei Yan
	of storing list of GeneralTrait objects Added print statements to track memory usage
2013-05-08	Worked on correlation page	Lei Yan
	Wrote function in dataset.py that gets all the traits in a dataset and their sample values
2013-04-23	Created file correlation_plot.py for the correlation scatterplot	Zachary Sloan
	Reverted temp_data.py to previous version that doesn't include the "part" input (for chunks) Made change to lmm related to splitting main iterator into chunks Deleted a bunch of unnecessary commented out code from show_trait.py
2013-04-18	LMM code now reads in gzipped pickled plink snp iterator object	Zachary Sloan

2013-04-18	input file is now loaded by pickle	Zachary Sloan

2013-03-22	Added secure_server.py	Zachary Sloan
	Updated notes.txt
2013-03-22	Removed zach_settings.py from git tracking	Zachary Sloan
	Changed mysql password as a result of it being up on git before
2013-03-13	Added some to notes	Zachary Sloan

2013-03-05	Implemented DataTables; there are now options to download the marker	Zachary Sloan
	regression result table in various formats
2013-02-22	Added some to notes	Zachary Sloan

2013-02-21	Adding genotypes and new_genotypes (json files) directories to git	Zachary Sloan
	so they can be pulled to the new EC2 server
2013-01-31	Deleted nginx.conf from the other_conf directory not in wqflask	Zachary Sloan

2013-01-25	Added a bunch of things to notes	Zachary Sloan

2013-01-24	Added a lot to the notes in the process of setting up on the	Zachary Sloan
	new server
2013-01-23	Added a bunch to notes and created new notes file specifically	Zachary Sloan
	related to installing a new instance of GN
2013-01-22	Added a couple things to notes regarding installing mysql client	Zachary Sloan

2013-01-18	Renamed CorrelationPage.py to show_corr_results.py	Zachary Sloan
	Worked with correlation code; got to the code that begins to do the actual correlations Created a function "get_dataset_and_trait" in the new file "helper_functions.py" because the code initializing the dataset and trait objects was repeated in multiple places
2013-01-11	Overwrote requirements.txt	Zachary Sloan

2013-01-04	Correct results are being returned from reaper for the marker regression page	Zachary Sloan

2012-12-05	Renamed webqtlTrait.py to trait.py	Zachary Sloan
	Renamed webqtlTrait class to GeneralTrait Began process of removing fd from show_trait.py Created DatasetGroup object in data_set.py (this may end up becoming its own file later if it becomes big enough)
2012-11-21	Changed parser to allow for bother square brackets and parentheses	Zachary Sloan
	Changed show_trait.coffee to get the stats table working again Still need to get stats table to work with changed values
2012-11-01	Began integrating do_search.py's DoSearch object into search_results.py,	Zachary Sloan
	with simple searches returning correct results Still need to make results display in the table Sam also did some work with the bootstrap styling
2012-10-23	Finished coffeescript that handles the home page dataset selection dropdowns	Zachary Sloan

2012-10-19	Finished gen_select_dataset.py which generates the json file that defines the	Zachary Sloan
	data structure used for the index page select dropdowns
2012-10-09	Used tidyp to improve/beautify index_page.html	Zachary Sloan

2012-09-25	Fixed issue with parent strains appearing twice and began replacing variable ↵	Zachary Sloan
	names (strain -> sample, for example)
2012-09-13	Worked on improving readData and informativeStrains functions in ↵	Zachary Sloan
	webqtlFormData while trying to get correlation page running
2012-09-12	Worked towards correctly passing form data to correlation page and addressed ↵	Zachary Sloan
	various bugs that arose while doing so