| Age | Commit message (Expand) | Author |
|---|
| 2024-02-14 | replace font awesome external links | Alexander_Kabui |
| 2024-01-30 | Error reporting: Pass external error forward to GN2's error handling | Frederick Muriuki Muriithi |
| 2024-01-30 | Create framework for error handling and handle connection errors | Frederick Muriuki Muriithi |
| 2024-01-25 | fix on UI wording | Alexander_Kabui |
| 2024-01-25 | fix issue loading gnqa prev queries on base file | Alexander_Kabui |
| 2024-01-25 | add view point for gnqa search history | Alexander_Kabui |
| 2024-01-25 | Add modal for search history | Alexander_Kabui |
| 2024-01-19 | Add list panel implementation | Alexander_Kabui |
| 2024-01-18 | fix for qnqa ui letter spacing | Alexander_Kabui |
| 2024-01-16 | fix typo error | Alexander_Kabui |
| 2024-01-16 | add UI for reference rating gn-llm documents | Alexander_Kabui |
| 2024-01-12 | Correctly patch the db connection when fetching accession_id....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
| Munyoki Kilyungi |
| 2024-01-12 | Switch NCBI link from http to https in failing test and RDF query....* gn2/tests/wqflask/show_trait/test_show_trait.py
(test_get_ncbi_summary_request): Replace
"http://eutils.ncbi.nlm.nih.gov" with
"https://eutils.ncbi.nlm.nih.gov"
* gn2/wqflask/views.py (get_probeset): Ditto.
Co-authored-by: Alexander Kabui <Alexanderkabua@gmail.com>
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-01-10 | Check whether the metadata.dataset group first exists....* gn2/wqflask/templates/genotype.html: Add metadata.dataset check in
and clause.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-01-10 | Add a compare button that shows the current genotype page....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-01-10 | Add dataset metadata to genotype page when a dataset is specified....* gn2/wqflask/templates/genotype.html: Add extra dataset metadata.
* gn2/wqflask/views.py (get_genotype): Extend genotype URL to enable
specifying the dataset name.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-01-09 | Fix the way accession_id is set + update info link on correlation page | zsloan |
| 2024-01-09 | Update script's module path. | Frederick Muriuki Muriithi |
| 2024-01-09 | Update module paths...With the reorganisation, a number of module paths changed, and need to
be updated. This commit fixes a few obvious ones.
| Frederick Muriuki Muriithi |
| 2024-01-08 | Update default permutations for R/qtl to 0 | zsloan |
| 2024-01-08 | Update ncbi summary link to https, since before it was spending extra time tr... | zsloan |
| 2024-01-08 | Update DB info link on search result page and trait page | zsloan |
| 2024-01-08 | Fix issue where mapmodel_rqtl and mapmethod_rqtl were still named mapmodel_rq... | zsloan |
| 2024-01-08 | Add a compare button that shows the current probeset page....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-01-08 | Include Entrez summary for a geneID on the ProbeSet page....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-01-08 | Add dataset metadata to probeset page when a dataset is specified....* gn2/wqflask/templates/probeset.html: Add extra dataset metadata
elements for groups, species, tissue name and dataset link.
* gn2/wqflask/views.py (get_probeset): Extend probeset URL to enable
specifying the dataset name.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-01-08 | add GNQA description | Alexander_Kabui |
| 2024-01-08 | code refactoring for gn llm ui | Alexander_Kabui |
| 2024-01-08 | add css file for gn-llm-ui | Alexander_Kabui |
| 2024-01-08 | revert to use GN3_LOCAL_URL for gn3 api endpoint | Alexander_Kabui |
| 2024-01-08 | fix url error | Alexander_Kabui |
| 2024-01-08 | fix url error | Alexander_Kabui |
| 2024-01-08 | merge testing | Alexander_Kabui |
| 2024-01-08 | revert commit gn server url | Alexander_Kabui |
| 2024-01-06 | Add probeset RDF page....* gn2/wqflask/templates/probeset.html: New probeset HTML file.
* gn2/wqflask/views.py (get_probeset): New function.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-01-05 | fix error | Alexander_Kabui |
| 2024-01-05 | fetch gn_server_url from current config | Alexander_Kabui |
| 2024-01-02 | Fix path to error GIFs....genenetwork2 is now run from the top-level directory of the repo. So,
we prepend gn2 to the error GIF path.
* gn2/wqflask/views.py (handle_generic_exceptions): Prepend gn2 to
error GIF path.
| Arun Isaac |
| 2024-01-02 | Make Group Info button point to info.genenetwork.org | zsloan |
| 2024-01-02 | Change the way the info button works so that it just submits a form instead o... | zsloan |
| 2024-01-02 | Move default settings into gn2 module. | Arun Isaac |
| 2024-01-02 | Consistently use GN_VERSION from app config....GN_VERSION is set in the configuration file and read into the app
config dictionary. Use that instead of re-reading from the etc/VERSION
file.
* gn2/utility/tools.py (gn_version): Delete function.
(GN_VERSION): Delete variable.
* gn2/wqflask/metadata_edits.py (display_phenotype_metadata,
display_probeset_metadata, show_history): Use GN_VERSION in app
config.
* gn2/wqflask/views.py: Do not import GN_VERSION from
gn2.utility.tools.
(handle_generic_exceptions, index_page.__render__, submit_trait_form):
Use GN_VERSION in app config.
| Arun Isaac |
| 2024-01-02 | merge changes | Alexander_Kabui |
| 2023-12-30 | Namespace mock paths under gn2. | Arun Isaac |
| 2023-12-29 | Namespace all modules under gn2....We move all modules under a gn2 directory. This is important for
"correct" packaging and deployment as a Guix service.
| Arun Isaac |
