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2024-03-27Delete unused javascript in gnqa page....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Add missing braces/brackets....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Enable auto-complete in form....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Clean up gnqa answer page....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Delete unused template....* gn2/wqflask/templates/pubmed_modal.html: Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Delete llm.css and it's references....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Require ouath2 for gnqa history search....* gn2/wqflask/views.py (gnqna_hist): Add "require_oauth2" decorator. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Add htmx indicator....Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-27Add some styling to AI search bar....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Move search box to below the header....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Wrap "search" block round entire div that nests the search box....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Format files....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Re-locate gnqa search box to gnqa.html....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Require log-in to use the gn-qa search system....* gn2/wqflask/views.py: Import require_oauth2. (gnqna): Add "require_oauth2" decorator. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Clean up base.html....* gn2/wqflask/templates/base.html: Replace TABS with white-space. Fix hanging html tags. Format file. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Rework GN-QA landing page....Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-27Fix mark-up in gn-qa landing page....Co-authored-by: Alexander Kabui <Alexanderkabua@gmail.com> Munyoki Kilyungi
2024-03-26Patch correct module to fix tests.Frederick Muriuki Muriithi
2024-03-26Revert "bug: gn2.wqflask.resource_manager has no `requests` defined"...This reverts commit dde660453fc402b020178db41d136334a1b91b89. Frederick Muriuki Muriithi
2024-03-26Revert "Update test function signatures and remove obsolete tests."...This reverts commit 77af7c016749998d62b769bdd24069f511925ef9. Frederick Muriuki Muriithi
2024-03-26Update test function signatures and remove obsolete tests.Frederick Muriuki Muriithi
2024-03-26bug: gn2.wqflask.resource_manager has no `requests` defined...gn2.wqflask.resource_manager module does not have a `requests` variable or function defined, leading to errors in the test. Frederick Muriuki Muriithi
2024-03-26Revert "Disable CaseAttributeId - because it needs an update to the database"...This reverts commit 4539ef0297bb4b8c2954f250697c237069a16d64. This commit was ignoring the historical context that led to the changes in the schema of the `CaseAttribute*` tables, and leads to errors when the database schema is updated. Frederick Muriuki Muriithi
2024-03-26Add missing docstrings to save/metadata_edit functions....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Add "dataset.name" field to the editor form....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Only display the "edit" link when a user has edit permissions....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Add a final fallback for match expression....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Use correct variable name....* gn2/wqflask/oauth2/client.py (no_token_post): "uri" does not exist. Replace it with "uri_path." Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Delete unused variable....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Use "require_oauth2_edit_resource_access" for edit/save endpoints....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Implement "require_oauth2_edit_resource_access" decorator....* gn2/wqflask/oauth2/checks.py (require_oauth2): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Replace "__" prefix for with "_"....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Import user_logged_in from the clients module....Importing "user_logged_in" in the checks module just to export adds a layer of indirection and makes the code hard to read. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Delete repetitive statement in "render_ui"....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Remove unused imports....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Auto-pep8 (using flake8) file....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Replace "login_required" with "require_oauth2"....* gn2/wqflask/edit.py: Replace "login_required" import with "require_oauth2". (metadata_edit): Replace "login_required" with "require_oauth2". (edit): Ditto. (save): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Remove unused declared variable....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Remove typo from template....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Add extra "edit" buttons to the relevant sections....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Make the description bold....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Reset repo and pull then write changes before committing....* gn2/wqflask/edit.py: Import session_info. (save_dataset_metadata): Add author as an argument. Reset repo and pull then write changes before committing. Split strings before __run_cmd is called. (metadata_edit): Rename "metadata" -> "__metadata". (save): Save the output to the correct path. Pass author to "save_dataset_metadata". Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Prevent shell injection by disabling shell invocation in subprocess....See: <https://stackoverflow.com/questions/52019920/python3-sanitizing-user-input-passed-to-shell-as-parameter> for more information. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Add a hidden input form element for "section"....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Replace Path construct with a format string....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Add missing "curry" to __run_cmd....This is required to be able to pass __run_cmd through a pipeline. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Replace Path.join with urljoin for url paths....* gn2/wqflask/edit.py: Import urljoin. (metadata_edit): Replace Path with urljoin. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Have one template for datasets....* gn2/wqflask/templates/metadata/dataset.html: Move this ... * gn2/wqflask/templates/dataset.html: ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Delete search dataset functionality in RDF....* gn2/wqflask/views.py (search_for_dataset): Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-03-26Make GN3_LOCAL_URL local to avoid circular imports....* gn2/wqflask/edit.py: Move GN3_LOCAL_URL ... (metadata_edit): ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi