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2024-10-01Merge pull request #877 from genenetwork/feature/cleanup-base-fileHEADtestingAlexander Kabui
Feature/cleanup base file
2024-09-27Refactor: use url_for to fetch static files.Alexander_Kabui
2024-09-26feat: Modify templates to extend from index_page.Alexander_Kabui
* This ensures we have the global search functionality included for all.
2024-09-26Refactor: Fix order for importing css and js files.Alexander_Kabui
2024-09-26Refactor: Apply linting to gsearch template file.Alexander_Kabui
2024-09-25DEBUG: Log out R/qtl2 or Pair-Scan resultsFrederick Muriuki Muriithi
Running R/qtl2 and Pair-Scan results in the production container fails, but somehow runs on production. This implies a possible configuration thing that is not explicit. Hopefully this debug helps surface the cause to enable fixing.
2024-09-24Fix how name/dataset are passed to hmac_creation in Xapian search resultszsloan
Apparently the .data is necessary, because otherwise it passed some "Just" class that is interpreted as a hash or something. This causes an hmac mismatch when you do things like WebGestalt (and presumably other link-outs as well)
2024-09-24Call the function to get the result.Frederick Muriuki Muriithi
2024-09-24Fix: use logged_in function to check user auth status.Alexander_Kabui
2024-09-24Feat: extend index_page for gsearch_geno and pheno to include globalAlexander_Kabui
search in templates.
2024-09-24Refactor: remove custom css from base file.Alexander_Kabui
2024-09-24Refactor: refactor global search code in index file.Alexander_Kabui
* Include global search via gsearch template.
2024-09-24Refactor: move global search functionality to own module.Alexander_Kabui
2024-09-24Refactor: apply djlint for index page file.Alexander_Kabui
2024-09-23Add method to clear redirect url from session.Alexander_Kabui
2024-09-23Fix: link to the correct url for xapian syntax help.Alexander_Kabui
2024-09-23Refactor: run djlint for base html file.Alexander_Kabui
2024-09-23Refactor: remove empty classes and ids.Alexander_Kabui
2024-09-23Refactor: remove empty classes.Alexander_Kabui
2024-09-23Fix: fix orphan tags.Alexander_Kabui
2024-09-23Fix: use correct classname for dropdown.Alexander_Kabui
2024-09-23Fix: close spans with caret class.Alexander_Kabui
2024-09-23Refactor: run djlint for index page file.Alexander_Kabui
2024-09-23Refactor: move global search js to index file.Alexander_Kabui
2024-09-23Refactor: move global search css to index page.Alexander_Kabui
2024-09-23Refactor: Init move search from base to index file.Alexander_Kabui
2024-09-20Fix cases where index for '.' and ',' do not exist for do_ai_search.Alexander_Kabui
2024-09-20Minor fix: remove unused variable name.Alexander_Kabui
2024-09-20Add request exception handler for gn-docs.Alexander_Kabui
2024-09-20Add error template for gn_docs.Alexander_Kabui
2024-09-19Add a page for searching GeneWiki by symbol.Munyoki Kilyungi
* gn2/wqflask/templates/wiki/search.html: New template. * gn2/wqflask/views.py (search_wiki): New end-point. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-09-19Merge pull request #875 from genenetwork/chores/implement-redirect-for-gn2-authAlexander Kabui
Chores/implement redirect for users
2024-09-18Show the Location for the Description when selecting a cofactor that is a ↵zsloan
genotype marker
2024-09-18Make all code related to Spearman Rank scatterplot conditional on not being ↵zsloan
an Effect Size plot
2024-09-18Increase scatterplot tick lengthzsloan
2024-09-18Refactor: drop __clear_session__ function.Alexander_Kabui
2024-09-18Refactor: try to build endpoint with get request.Alexander_Kabui
If BuildError is raised default to "/"
2024-09-18Update editor preview on mouse click over the editor.Alexander_Kabui
2024-09-18fix minor issue for setting redirect url.Alexander_Kabui
2024-09-18feat(auth): implement redirect to login page and save current endpoint to ↵Alexander_Kabui
session * Redirect users to the login page when authentication is required. * Save the current endpoint in the session for post-login redirection.
2024-09-18After login redirect users to the next request endpoint.Alexander_Kabui
2024-09-18Add new optional parameter to session object: redirect_url.Alexander_Kabui
2024-09-18feat: split header on sentences or commasJohn Nduli
2024-09-18feat: improve animations text in llm search integrationJohn Nduli
2024-09-17Remove 'row' class from the global search summary text, since it was causing ↵zsloan
it to be out of alignment with the rest of the page
2024-09-17Redirect users to login page if they attempt to access a service that ↵Alexander_Kabui
requires authentication but are not logged in
2024-09-17Don't set number/format of ticks for Y-Axiszsloan
Now that there's a flag for whether a plot is an Effect Size plot, there's no need for this
2024-09-17Handle Effect Size plots on the scatterplot pagezsloan
Added a new parameter to the scatterplot page ('effect') that causes the figures to be drawn differently. For example: - The plot width is different - Spearman Rank plot isn't displayed/generated - The number of X-axis ticks is explicitly set to 3, with no decimal places
2024-09-17Explicitly set width for scatterplot div so the X/Y-axis description text ↵zsloan
doesn't extend beyond the width of the plot itself
2024-09-17refactor: improve do_ai_searchJohn Nduli