| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-06-10 | Set default headers for OAuth2Client requests. | Frederick Muriuki Muriithi | |
| 2024-06-10 | Simplify 'View-Resource page' UI | Frederick Muriuki Muriithi | |
| Get rid of the resource role details and provide button-like elements to help navigate to view more details. | |||
| 2024-06-07 | PoC: Display resource roles on View-Resource page. | Frederick Muriuki Muriithi | |
| 2024-06-07 | Update UI: Use resource roles rather than obsolete group roles | Frederick Muriuki Muriithi | |
| In a fix to fix a privilege-escalation bug, the `…/group/roles` endpoint was entirely removed and replaced with the less error-prone `…/resource/…/roles` endpoint. This commit updates the code to use the new endpoint's data as appropriate. We also fix typos in some url_for routing arguments. | |||
| 2024-06-06 | UI: Add placeholder for resource roles | Frederick Muriuki Muriithi | |
| 2024-06-06 | Fix displayed error message | Frederick Muriuki Muriithi | |
| 2024-06-06 | Remove the "Roles" page. | Frederick Muriuki Muriithi | |
| 2024-06-06 | Deactivate the "create_role" function | Frederick Muriuki Muriithi | |
| The `create_role` function could lead to privilege escalation. This commit deactivates it completely to prevent the chance of that happening. | |||
| 2024-06-05 | Bug: Add missing data to search query. | Frederick Muriuki Muriithi | |
| 2024-06-05 | Build search URI endpoint on server rather than on JS | Frederick Muriuki Muriithi | |
| To help with maintenance, build the search URI on the server rather than in the javascript. | |||
| 2024-06-05 | Build phenotype results template URI on backend | Frederick Muriuki Muriithi | |
| Build the template URI on the backend to remove the need to remember to update the javascript if the URI changes in the future. | |||
| 2024-06-04 | Provide client data used for user verification. | Frederick Muriuki Muriithi | |
| 2024-06-03 | Handle generic OAuthError gracefully | Frederick Muriuki Muriithi | |
| 2024-06-03 | Ensure endpoint returns a response. | Frederick Muriuki Muriithi | |
| 2024-05-31 | Enable NA sorting for case attributes | zsloan | |
| The NA-excluding sort functions were moved to table_functions.js (and removed from search_results.js) so they can be used by other pages (in this case the show_trait page) | |||
| 2024-05-30 | Fix redirection bug. | Frederick Muriuki Muriithi | |
| 2024-05-29 | Handle attributeError when getting error codes. | Alexander_Kabui | |
| 2024-05-28 | BugFix: return correct status code for generic exceptions handler. | Alexander_Kabui | |
| 2024-05-23 | Bug: Compute numeric timestamp for the claims. | Frederick Muriuki Muriithi | |
| 2024-05-22 | Check if case attribute for RRID is a list, to prevent it being added twice ↵ | zsloan | |
| in situations where a sample appears in both the parent/f1 file and the .geno file | |||
| 2024-05-21 | Change default for Mean Expr filter to OR for correlations to avoid ↵ | zsloan | |
| excluding any results when the page first loads | |||
| 2024-05-20 | Remove styling for search field. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-05-20 | Check metadata exists before setting 'editable' field in get_dataset. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-05-14 | Consistently use the same OAuthSession client | Frederick Muriuki Muriithi | |
| 2024-05-14 | Enable client to automatically request a refresh token. | Frederick Muriuki Muriithi | |
| 2024-05-14 | Redirect to index rather than no-longer supported login | Frederick Muriuki Muriithi | |
| Redirect to index of the site rather that the no-longer supported "Password Grant"-using login page. Disable the login route entirely. | |||
| 2024-05-13 | Disable gnqa functionality. | Alexander_Kabui | |
| * to test the functionality use ga.genenetwork.org | |||
| 2024-05-09 | Remove debug statements. | Alexander_Kabui | |
| 2024-05-09 | Improve error messaging for errors in gn fahamu UI. | Alexander_Kabui | |
| 2024-05-07 | Merge pull request #844 from genenetwork/feature/gnqa-ui-revamp | Alexander Kabui | |
| Use HTMX Js api to toggle upvote and downvote functionality. | |||
| 2024-05-07 | Use HTMX Js api to toggle upvote and downvote functionality. | Alexander_Kabui | |
| 2024-05-06 | Use correct link to point to xapian search. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Point the history to the upstream git repository. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Remove unused imports. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Use a dataset's label instead of it's id when fetching auth details. | Munyoki Kilyungi | |
| * gn2/wqflask/views.py (get_dataset): Use a dataset's label as it's identifier. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Pass JWT tokens to gn3. | Munyoki Kilyungi | |
| * gn2/wqflask/edit.py (save): Pass the JWT from gn-auth to GN3. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Revert "Create constructors for encoding and decoding a token." | Munyoki Kilyungi | |
| This reverts commit e7a3bf22da1b63a01343f2cd30cd13c234fe508c. | |||
| 2024-04-30 | Make returning an json object from oauth2_get optional. | Munyoki Kilyungi | |
| * gn2/wqflask/oauth2/client.py (oauth2_get): Add a jsonify_p key word that defaults to False. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Remove unused imports. | Munyoki Kilyungi | |
| * gn2/wqflask/edit.py: Delete subprocess, Paht, Either, Left, Right. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Delete __run__cmd__. | Munyoki Kilyungi | |
| * gn2/wqflask/edit.py (__run_cmd__): Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Remove methods for fetching a dataset's metadata edit history. | Munyoki Kilyungi | |
| * gn2/wqflask/edit.py (__fetch_dataset_git_history__): Delete (view_history): Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Delete function for saving metadata. | Munyoki Kilyungi | |
| * gn2/wqflask/edit.py (save_dataset_metadata): Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Create a JWT to pass in secinfo to a GN3 editing endpoint. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Create constructors for encoding and decoding a token. | Munyoki Kilyungi | |
| * gn2/tests/unit/wqflask/oauth2/(__init__.py, test_tokens.py): Test cases for jwt token creation. * gn2/wqflask/oauth2/tokens.py (JWTToken): New module for creating jwt tokens. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-25 | Merge pull request #841 from genenetwork/feature/implement-new-qnqa-ui-template | Alexander Kabui | |
| Feature/implement new qnqa UI template | |||
| 2024-04-24 | Bug: use dict object on Response object. | Frederick Muriuki Muriithi | |
| 2024-04-24 | Fetch message for authlib errors. | Frederick Muriuki Muriithi | |
| 2024-04-24 | Send assertion as a string, not bytes. | Frederick Muriuki Muriithi | |
| 2024-04-24 | Use app's logger rather than root logger. | Frederick Muriuki Muriithi | |
| 2024-04-24 | DEBUG: log out request details | Frederick Muriuki Muriithi | |
| There is a failure on CI/CD that is not obvious - the logs should help with debugging the issue. | |||
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