| Age | Commit message (Expand) | Author |
|---|
| 2024-06-10 | Implement "Resource Role Page"•••Show the page, providing all UI elements necessary, even if the
elements themselves are not active.
| Frederick Muriuki Muriithi |
| 2024-06-10 | Generalise `render_ur` for the resources pages | Frederick Muriuki Muriithi |
| 2024-06-10 | Set default headers for OAuth2Client requests. | Frederick Muriuki Muriithi |
| 2024-06-10 | Simplify 'View-Resource page' UI•••Get rid of the resource role details and provide button-like elements
to help navigate to view more details.
| Frederick Muriuki Muriithi |
| 2024-06-07 | PoC: Display resource roles on View-Resource page. | Frederick Muriuki Muriithi |
| 2024-06-07 | Update UI: Use resource roles rather than obsolete group roles•••In a fix to fix a privilege-escalation bug, the `…/group/roles`
endpoint was entirely removed and replaced with the less error-prone
`…/resource/…/roles` endpoint. This commit updates the code to use the
new endpoint's data as appropriate.
We also fix typos in some url_for routing arguments.
| Frederick Muriuki Muriithi |
| 2024-06-06 | UI: Add placeholder for resource roles | Frederick Muriuki Muriithi |
| 2024-06-06 | Fix displayed error message | Frederick Muriuki Muriithi |
| 2024-06-06 | Remove the "Roles" page. | Frederick Muriuki Muriithi |
| 2024-06-06 | Deactivate the "create_role" function•••The `create_role` function could lead to privilege escalation. This
commit deactivates it completely to prevent the chance of that
happening.
| Frederick Muriuki Muriithi |
| 2024-06-05 | Bug: Add missing data to search query. | Frederick Muriuki Muriithi |
| 2024-06-05 | Build search URI endpoint on server rather than on JS•••To help with maintenance, build the search URI on the server rather
than in the javascript.
| Frederick Muriuki Muriithi |
| 2024-06-05 | Build phenotype results template URI on backend•••Build the template URI on the backend to remove the need to remember
to update the javascript if the URI changes in the future.
| Frederick Muriuki Muriithi |
| 2024-06-04 | Provide client data used for user verification. | Frederick Muriuki Muriithi |
| 2024-06-03 | Handle generic OAuthError gracefully | Frederick Muriuki Muriithi |
| 2024-06-03 | Ensure endpoint returns a response. | Frederick Muriuki Muriithi |
| 2024-05-31 | Enable NA sorting for case attributes•••The NA-excluding sort functions were moved to
table_functions.js (and removed from search_results.js)
so they can be used by other pages (in this case the
show_trait page)
| zsloan |
| 2024-05-30 | Fix redirection bug. | Frederick Muriuki Muriithi |
| 2024-05-29 | Handle attributeError when getting error codes. | Alexander_Kabui |
| 2024-05-28 | BugFix: return correct status code for generic exceptions handler. | Alexander_Kabui |
| 2024-05-23 | Bug: Compute numeric timestamp for the claims. | Frederick Muriuki Muriithi |
| 2024-05-22 | Check if case attribute for RRID is a list, to prevent it being added twice i... | zsloan |
| 2024-05-21 | Change default for Mean Expr filter to OR for correlations to avoid excluding... | zsloan |
| 2024-05-20 | Remove styling for search field.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-05-20 | Check metadata exists before setting 'editable' field in get_dataset.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-05-14 | Consistently use the same OAuthSession client | Frederick Muriuki Muriithi |
| 2024-05-14 | Enable client to automatically request a refresh token. | Frederick Muriuki Muriithi |
| 2024-05-14 | Redirect to index rather than no-longer supported login•••Redirect to index of the site rather that the no-longer supported
"Password Grant"-using login page.
Disable the login route entirely.
| Frederick Muriuki Muriithi |
| 2024-05-13 | Disable gnqa functionality.••• * to test the functionality use ga.genenetwork.org
| Alexander_Kabui |
| 2024-05-09 | Remove debug statements. | Alexander_Kabui |
| 2024-05-09 | Improve error messaging for errors in gn fahamu UI. | Alexander_Kabui |
| 2024-05-07 | Merge pull request #844 from genenetwork/feature/gnqa-ui-revamp•••Use HTMX Js api to toggle upvote and downvote functionality. | Alexander Kabui |
| 2024-05-07 | Use HTMX Js api to toggle upvote and downvote functionality. | Alexander_Kabui |
| 2024-05-06 | Use correct link to point to xapian search.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-30 | Point the history to the upstream git repository.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-30 | Remove unused imports.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-30 | Use a dataset's label instead of it's id when fetching auth details.•••* gn2/wqflask/views.py (get_dataset): Use a dataset's label as it's
identifier.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-30 | Pass JWT tokens to gn3.•••* gn2/wqflask/edit.py (save): Pass the JWT from gn-auth to GN3.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-30 | Revert "Create constructors for encoding and decoding a token."•••This reverts commit e7a3bf22da1b63a01343f2cd30cd13c234fe508c.
| Munyoki Kilyungi |
| 2024-04-30 | Make returning an json object from oauth2_get optional.•••* gn2/wqflask/oauth2/client.py (oauth2_get): Add a jsonify_p key word
that defaults to False.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-30 | Remove unused imports.•••* gn2/wqflask/edit.py: Delete subprocess, Paht, Either, Left, Right.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-30 | Delete __run__cmd__.•••* gn2/wqflask/edit.py (__run_cmd__): Delete.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-30 | Remove methods for fetching a dataset's metadata edit history.•••* gn2/wqflask/edit.py (__fetch_dataset_git_history__): Delete
(view_history): Delete.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-30 | Delete function for saving metadata.•••* gn2/wqflask/edit.py (save_dataset_metadata): Delete.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-30 | Create a JWT to pass in secinfo to a GN3 editing endpoint.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-30 | Create constructors for encoding and decoding a token.•••* gn2/tests/unit/wqflask/oauth2/(__init__.py, test_tokens.py): Test
cases for jwt token creation.
* gn2/wqflask/oauth2/tokens.py (JWTToken): New module for creating jwt tokens.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-25 | Merge pull request #841 from genenetwork/feature/implement-new-qnqa-ui-template•••Feature/implement new qnqa UI template | Alexander Kabui |
| 2024-04-24 | Bug: use dict object on Response object. | Frederick Muriuki Muriithi |
| 2024-04-24 | Fetch message for authlib errors. | Frederick Muriuki Muriithi |
| 2024-04-24 | Send assertion as a string, not bytes. | Frederick Muriuki Muriithi |
