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2021-10-26Remove unnecessary git pull commands from installation instructionsjgart
2021-10-25Merge github.com:genenetwork/genenetwork2 into acentenoArthur Centeno
2021-10-25Updated version of tutorials by ACenteno on 10-25-21Arthur Centeno
2021-10-13Add some documentation for generating heatmapsFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Add some documentation on generating the heatmaps, that would be useful for the end user.
2021-10-06doc: docker-container.org: Remove python2 gn2 docker set-up commandBonfaceKilz
2021-08-24README: on installing GN2Pjotr Prins
2021-08-24README: install with guix profilePjotr Prins
2021-06-28Added doc for creating guix profile, written by Bonfacezsloan
2021-06-17doc: rpy2-performance: Add a section exploring possible solutionsBonfaceKilz
2021-06-17docs: rpy2-performance: Indicate version of python-rpy2 being usedBonfaceKilz
2021-06-17doc: rpy2-performance: Replace begin_export with begin_srcBonfaceKilz
2021-06-17doc: Add results of investing rpy2 blocking issue in gn2BonfaceKilz
2021-05-26doc: docker-container: Rename python3-genenetwork2 to genenetwork2BonfaceKilz
See: https://is.gd/gHJvhe
2021-05-11doc: docker-container: Default to python3-genenetwork2 for examplesBonfaceKilz
2021-04-13SQL notes - table layoutPjotr Prins
2021-04-13SQL notes - table layoutPjotr Prins
2021-04-13SQL notesPjotr Prins
2021-04-13SQL notesPjotr Prins
2020-09-26Merge branch 'testing' into build/python3-migrationBonfaceKilz
2020-09-25Update docs on CI setup with dockerBonfaceKilz
* doc/docker-container.org: Update it.
2020-09-22Update documentation on testing and CIBonfaceKilz
* README.md: Update section on testing. * doc/docker-container.org: Add it.
2020-08-20Replace all references to python2.7 with python3.8BonfaceKilz
Run: ``` find . -type f -print0 | xargs -0 sed -i \ "s|lib/python2.7/site-packages|lib/python3.8/site-packages|g" ```
2020-07-27Merge branch 'testing' into testingPjotr Prins
2020-07-27Document how to run testsBonfaceKilz
* doc/testing.org: - Update how Mechanical Robs works. Python replaced Ruby as the testing tool - Add section that describes how to run unit tests
2020-07-25Updating docs and show how to include a local Python modulePjotr Prins
2020-04-30Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing.3Pjotr Prins
2020-04-30GN2 install checklistPjotr Prins
2020-04-28Redis settingPjotr Prins
2020-04-26Merge branch 'stable' of https://github.com/genenetwork/genenetwork2 into stableArthur Centeno
2020-04-24Replaced hard-coded instances of GN2 urls with ones pulled from settings filezsloan
2020-04-23DocsPjotr Prins
2020-04-20Remove ElasticPjotr Prins
2020-04-20Text search commentPjotr Prins
2020-04-20MariadbPjotr Prins
2020-01-14Updated Readme to reflect a couple changeszsloan
2019-05-31Minor changeszsloan
2019-05-29Added info for fetching trait listzsloan
2019-05-24Put API readme in correct placezsloan
2019-02-18Updated installation instructions and SERVER_PORT for single flask serverPjotr Prins
2018-10-15Added "as root" for instructions on running ESzsloan
Forgot to add to change user to root during the last commit
2018-10-15Updated instructions for running elasticsearchzsloan
Since I know I'll forget otherwise, updated instructions on starting up ES
2018-09-15Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingPjotr Prins
2018-08-23Added "change user to elasticsearch"zsloan
Added "change user to elasticsearch" to the description of how to start elasticsearch
2018-08-15ES commentPjotr Prins
2018-08-10Added the command needed to start up elasticsearchzsloan
I added the command to start elasticsearch, since I've had to look it up/ask Pjotr about it a couple times now.
2018-04-04ES: docPjotr Prins
2017-12-20Bring in some earlier work - mostly documentation and startup handlingPjotr Prins
2017-05-31JS module handlingPjotr Prins
2017-05-21Merge from the diet branch.Pjotr Prins
* refactored ./bin/genenetwork2 and /etc/default_settings - better detection of Guix - removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS - removing some default settings, such as PYLMM_COMMAND - rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY - added GUIX_JS_PATH for JS modules * Added documentation on installing binary GN2 * Updated Twitter board to latest version in Guix - it had broken * Updated many tools in the latest Guix profile
2016-11-08READMEPjotr Prins
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