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2019-02-13Removed pylmm references and related functionsPjotr Prins
2018-11-20Added option to select chromosome from trait page when mappingzsloan
Put transform/blocking tools into their own tab (still need to change formatting of tab's contents) Improved appearance of search result page table (still need to change a few other tables) Fixed issue that caused parent/f1 strains to not be blocked correctly when using "block by index" tool Basic Stats figures now load when the user clicks the tab, to improve initial page load time
2018-10-01- Can now remove cofactors from correlation scatterplot and select them by ↵zsloan
just clicking their row in collection - Cofactor color picker now works in Safari/Macs - Displays N for relevant samples in trait page sample table - Don't show bar chart when N>256 - Mapping loading page contents better centered - Anonymous collections timeout correctly listed as 30 days now - Minor allele frequency can actually be changed for GEMMA now (previously didn't work) - Fixed transcript position marker location for mapping results - Notifies user if their e-mail isn't associated with an account when they attempt to request forgotten password - Users can now map with submitted traits - Histogram width changes depending upon number of bins (need to improve this still) - Improved Q-q plot (previously called "probability plot")
2018-04-16Docs on elasticsearch usePjotr Prins
2018-04-12README and docsPjotr Prins
2018-04-04ES: docPjotr Prins
2018-04-02Testing moved to PythonPjotr Prins
2018-03-26- Disabled PYTHONPATH injection - fix Guix instead, see ↵Pjotr Prins
https://github.com/pjotrp/genenetwork2/commit/63a5c8a42ad02e9126bb207465ff5eca98f6515d - Renamed WQFLASK_SETTINGS to GN2_SETTINGS
2018-03-26Requests addedPjotr Prins
2018-03-26Fixing authentication stuff so it uses parameters properly. Also no ↵Pjotr Prins
PYTHONPATH needed as it is now in the Guix build.
2018-03-26Fix conflictPjotr Prins
2018-03-26Add elasticsearch module to the pathMuriithi Frederick Muriuki
* Add some code to set up the path for the python-elasticsearch module.
2018-02-11Added gunicorn pid so we can not run twicePjotr Prins
2018-02-11Using eventlet workerszsloan
2018-02-10Fix env variable $GEMMA_WRAPPER_COMMANDPjotr Prins
2018-02-10Fixing GEMMA LOCOPjotr Prins
2018-02-10Check for bimbam path and bail out if it is missingPjotr Prins
2018-01-31Startup: longer timeout for gunicorn-dev modePjotr Prins
2018-01-31Startup: added -cli optionPjotr Prins
2018-01-30gunicorn dev and prod modes addedPjotr Prins
2018-01-29Fixed gunicorn examplePjotr Prins
2018-01-29Gunicorn worksPjotr Prins
2018-01-29startup script: adapting for gunicornPjotr Prins
2018-01-29Added checks in startup script, removed r-auwerx pathPjotr Prins
2017-12-20Bring in some earlier work - mostly documentation and startup handlingPjotr Prins
2017-09-14./bin/genenetwork2: add GEM_PATH for gemma-wrapperPjotr Prins
2017-09-04gemma-wrapper: find binary in profilePjotr Prins
2017-06-02settings: GENENETWORK_FILESPjotr Prins
2017-05-31JS module handlingPjotr Prins
2017-05-21Merge from the diet branch.Pjotr Prins
* refactored ./bin/genenetwork2 and /etc/default_settings - better detection of Guix - removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS - removing some default settings, such as PYLMM_COMMAND - rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY - added GUIX_JS_PATH for JS modules * Added documentation on installing binary GN2 * Updated Twitter board to latest version in Guix - it had broken * Updated many tools in the latest Guix profile
2016-10-09Tests: change optionsPjotr Prins
2016-10-09Add version informationPjotr Prins
2016-10-07Saner handling of TMPDIR and TEMPDIRPjotr Prins
Throw error when TMPDIRs are not writable
2016-10-07Startup script: add profile to the PATH and set LC_ALL to default to C ↵Pjotr Prins
(should be changed some day)
2016-10-05Testing: show --all optionPjotr Prins
2016-10-03Use of GN2_PROFILEPjotr Prins
2016-10-03Config: supporting JSON OVERRIDESPjotr Prins
2016-10-03Handle JSON override files in startup scriptPjotr Prins
2016-09-26Test: --all switch addedPjotr Prins
2016-09-26Mechanical Rob: make it possible to run single testsPjotr Prins
2016-09-25Testing: looking for a way to run pylmmPjotr Prins
2016-09-13Run scripts from ./wqflask - just like the webserverPjotr Prins
2016-09-10Support for running maintenance scripts so they can pick up all webserver ↵Pjotr Prins
settings Run with ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
2016-06-24Log: and document SQL callsPjotr Prins
2016-06-17Testing: added default runPjotr Prins
2016-06-17Testing: do not use camelcase for filesPjotr Prins
2016-06-17Testing: getting tests to run quietlyPjotr Prins
2016-05-18Added a new Navigation Test suite Dennis E. Mungai
A new option for running the script is now available. See the output of ./test-website -n for usage.
2016-04-28Test: splitting out static URL testsPjotr Prins
2016-04-27Test: get to trait pagePjotr Prins
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-22 11:16:16 +0000