Age | Commit message (Expand) | Author |
2020-08-20 | Replace all references to python2.7 with python3.8...Run:
```
find . -type f -print0 | xargs -0 sed -i \
"s|lib/python2.7/site-packages|lib/python3.8/site-packages|g"
```
| BonfaceKilz |
2020-07-25 | Updating docs and show how to include a local Python module | Pjotr Prins |
2020-05-12 | Remove eventletepysode | Pjotr Prins |
2020-04-26 | Merge master and testingmaster | Pjotr Prins |
2019-09-24 | Fixed issue that caused logging in to stop working with new GUIX build...Removed some unused JS libraries
| zsloan |
2019-02-13 | Removed pylmm references and related functions | Pjotr Prins |
2018-11-20 | Added option to select chromosome from trait page when mapping...Put transform/blocking tools into their own tab (still need to change formatting of tab's contents)
Improved appearance of search result page table (still need to change a few other tables)
Fixed issue that caused parent/f1 strains to not be blocked correctly when using "block by index" tool
Basic Stats figures now load when the user clicks the tab, to improve initial page load time
| zsloan |
2018-10-01 | - Can now remove cofactors from correlation scatterplot and select them by ju......- Cofactor color picker now works in Safari/Macs
- Displays N for relevant samples in trait page sample table
- Don't show bar chart when N>256
- Mapping loading page contents better centered
- Anonymous collections timeout correctly listed as 30 days now
- Minor allele frequency can actually be changed for GEMMA now (previously didn't work)
- Fixed transcript position marker location for mapping results
- Notifies user if their e-mail isn't associated with an account when they attempt to request forgotten password
- Users can now map with submitted traits
- Histogram width changes depending upon number of bins (need to improve this still)
- Improved Q-q plot (previously called "probability plot")
| zsloan |
2018-09-05 | Production updates | GN2 |
2018-04-16 | Docs on elasticsearch use | Pjotr Prins |
2018-04-12 | README and docs | Pjotr Prins |
2018-04-04 | ES: doc | Pjotr Prins |
2018-04-02 | Testing moved to Python | Pjotr Prins |
2018-03-26 | - Disabled PYTHONPATH injection - fix Guix instead, see https://github.com/pj......- Renamed WQFLASK_SETTINGS to GN2_SETTINGS
| Pjotr Prins |
2018-03-26 | Requests added | Pjotr Prins |
2018-03-26 | Fixing authentication stuff so it uses parameters properly. Also no PYTHONPAT......it is now in the Guix build.
| Pjotr Prins |
2018-03-26 | Fix conflict | Pjotr Prins |
2018-03-26 | Add elasticsearch module to the path...* Add some code to set up the path for the python-elasticsearch module.
| Muriithi Frederick Muriuki |
2018-02-11 | Added gunicorn pid so we can not run twice | Pjotr Prins |
2018-02-11 | Using eventlet workers | zsloan |
2018-02-10 | Fix env variable $GEMMA_WRAPPER_COMMAND | Pjotr Prins |
2018-02-10 | Fixing GEMMA LOCO | Pjotr Prins |
2018-02-10 | Check for bimbam path and bail out if it is missing | Pjotr Prins |
2018-01-31 | Startup: longer timeout for gunicorn-dev mode | Pjotr Prins |
2018-01-31 | Startup: added -cli option | Pjotr Prins |
2018-01-30 | gunicorn dev and prod modes added | Pjotr Prins |
2018-01-29 | Fixed gunicorn example | Pjotr Prins |
2018-01-29 | Gunicorn works | Pjotr Prins |
2018-01-29 | startup script: adapting for gunicorn | Pjotr Prins |
2018-01-29 | Added checks in startup script, removed r-auwerx path | Pjotr Prins |
2017-12-20 | Bring in some earlier work - mostly documentation and startup handling | Pjotr Prins |
2017-09-14 | ./bin/genenetwork2: add GEM_PATH for gemma-wrapper | Pjotr Prins |
2017-09-04 | gemma-wrapper: find binary in profile | Pjotr Prins |
2017-06-02 | settings: GENENETWORK_FILES | Pjotr Prins |
2017-05-31 | JS module handling | Pjotr Prins |
2017-05-21 | Merge from the diet branch.... * refactored ./bin/genenetwork2 and /etc/default_settings
- better detection of Guix
- removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS
- removing some default settings, such as PYLMM_COMMAND
- rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY
- added GUIX_JS_PATH for JS modules
* Added documentation on installing binary GN2
* Updated Twitter board to latest version in Guix - it had broken
* Updated many tools in the latest Guix profile
| Pjotr Prins |
2016-10-09 | Tests: change options | Pjotr Prins |
2016-10-09 | Add version information | Pjotr Prins |
2016-10-07 | Saner handling of TMPDIR and TEMPDIR...Throw error when TMPDIRs are not writable
| Pjotr Prins |
2016-10-07 | Startup script: add profile to the PATH and set LC_ALL to default to C (shoul... | Pjotr Prins |
2016-10-05 | Testing: show --all option | Pjotr Prins |
2016-10-03 | Use of GN2_PROFILE | Pjotr Prins |
2016-10-03 | Config: supporting JSON OVERRIDES | Pjotr Prins |
2016-10-03 | Handle JSON override files in startup script | Pjotr Prins |
2016-09-26 | Test: --all switch added | Pjotr Prins |
2016-09-26 | Mechanical Rob: make it possible to run single tests | Pjotr Prins |
2016-09-25 | Testing: looking for a way to run pylmm | Pjotr Prins |
2016-09-13 | Run scripts from ./wqflask - just like the webserver | Pjotr Prins |
2016-09-10 | Support for running maintenance scripts so they can pick up all webserver set......Run with
./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
| Pjotr Prins |
2016-06-24 | Log: and document SQL calls | Pjotr Prins |