| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2021-12-01 | Introduce GN3_PYTHONPATH environment variable | Pjotr Prins | |
| 2021-10-28 | Remove all elasticsearch references in gn2 | BonfaceKilz | |
| 2021-08-06 | gunicorn production settings: increase process refresh rate to clean up RAM. ↵ | Pjotr Prins | |
| Also use the jitter switch. | |||
| 2020-08-20 | Replace all references to python2.7 with python3.8 | BonfaceKilz | |
| Run: ``` find . -type f -print0 | xargs -0 sed -i \ "s|lib/python2.7/site-packages|lib/python3.8/site-packages|g" ``` | |||
| 2020-07-25 | Updating docs and show how to include a local Python module | Pjotr Prins | |
| 2020-05-12 | Remove eventletepysode | Pjotr Prins | |
| 2020-04-26 | Merge master and testingmaster | Pjotr Prins | |
| 2019-09-24 | Fixed issue that caused logging in to stop working with new GUIX build | zsloan | |
| Removed some unused JS libraries | |||
| 2019-02-13 | Removed pylmm references and related functions | Pjotr Prins | |
| 2018-11-20 | Added option to select chromosome from trait page when mapping | zsloan | |
| Put transform/blocking tools into their own tab (still need to change formatting of tab's contents) Improved appearance of search result page table (still need to change a few other tables) Fixed issue that caused parent/f1 strains to not be blocked correctly when using "block by index" tool Basic Stats figures now load when the user clicks the tab, to improve initial page load time | |||
| 2018-10-01 | - Can now remove cofactors from correlation scatterplot and select them by ↵ | zsloan | |
| just clicking their row in collection - Cofactor color picker now works in Safari/Macs - Displays N for relevant samples in trait page sample table - Don't show bar chart when N>256 - Mapping loading page contents better centered - Anonymous collections timeout correctly listed as 30 days now - Minor allele frequency can actually be changed for GEMMA now (previously didn't work) - Fixed transcript position marker location for mapping results - Notifies user if their e-mail isn't associated with an account when they attempt to request forgotten password - Users can now map with submitted traits - Histogram width changes depending upon number of bins (need to improve this still) - Improved Q-q plot (previously called "probability plot") | |||
| 2018-09-05 | Production updates | GN2 | |
| 2018-04-16 | Docs on elasticsearch use | Pjotr Prins | |
| 2018-04-12 | README and docs | Pjotr Prins | |
| 2018-04-04 | ES: doc | Pjotr Prins | |
| 2018-04-02 | Testing moved to Python | Pjotr Prins | |
| 2018-03-26 | - Disabled PYTHONPATH injection - fix Guix instead, see ↵ | Pjotr Prins | |
| https://github.com/pjotrp/genenetwork2/commit/63a5c8a42ad02e9126bb207465ff5eca98f6515d - Renamed WQFLASK_SETTINGS to GN2_SETTINGS | |||
| 2018-03-26 | Requests added | Pjotr Prins | |
| 2018-03-26 | Fixing authentication stuff so it uses parameters properly. Also no ↵ | Pjotr Prins | |
| PYTHONPATH needed as it is now in the Guix build. | |||
| 2018-03-26 | Fix conflict | Pjotr Prins | |
| 2018-03-26 | Add elasticsearch module to the path | Muriithi Frederick Muriuki | |
| * Add some code to set up the path for the python-elasticsearch module. | |||
| 2018-02-11 | Added gunicorn pid so we can not run twice | Pjotr Prins | |
| 2018-02-11 | Using eventlet workers | zsloan | |
| 2018-02-10 | Fix env variable $GEMMA_WRAPPER_COMMAND | Pjotr Prins | |
| 2018-02-10 | Fixing GEMMA LOCO | Pjotr Prins | |
| 2018-02-10 | Check for bimbam path and bail out if it is missing | Pjotr Prins | |
| 2018-01-31 | Startup: longer timeout for gunicorn-dev mode | Pjotr Prins | |
| 2018-01-31 | Startup: added -cli option | Pjotr Prins | |
| 2018-01-30 | gunicorn dev and prod modes added | Pjotr Prins | |
| 2018-01-29 | Fixed gunicorn example | Pjotr Prins | |
| 2018-01-29 | Gunicorn works | Pjotr Prins | |
| 2018-01-29 | startup script: adapting for gunicorn | Pjotr Prins | |
| 2018-01-29 | Added checks in startup script, removed r-auwerx path | Pjotr Prins | |
| 2017-12-20 | Bring in some earlier work - mostly documentation and startup handling | Pjotr Prins | |
| 2017-09-14 | ./bin/genenetwork2: add GEM_PATH for gemma-wrapper | Pjotr Prins | |
| 2017-09-04 | gemma-wrapper: find binary in profile | Pjotr Prins | |
| 2017-06-02 | settings: GENENETWORK_FILES | Pjotr Prins | |
| 2017-05-31 | JS module handling | Pjotr Prins | |
| 2017-05-21 | Merge from the diet branch. | Pjotr Prins | |
| * refactored ./bin/genenetwork2 and /etc/default_settings - better detection of Guix - removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS - removing some default settings, such as PYLMM_COMMAND - rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY - added GUIX_JS_PATH for JS modules * Added documentation on installing binary GN2 * Updated Twitter board to latest version in Guix - it had broken * Updated many tools in the latest Guix profile | |||
| 2016-10-09 | Tests: change options | Pjotr Prins | |
| 2016-10-09 | Add version information | Pjotr Prins | |
| 2016-10-07 | Saner handling of TMPDIR and TEMPDIR | Pjotr Prins | |
| Throw error when TMPDIRs are not writable | |||
| 2016-10-07 | Startup script: add profile to the PATH and set LC_ALL to default to C ↵ | Pjotr Prins | |
| (should be changed some day) | |||
| 2016-10-05 | Testing: show --all option | Pjotr Prins | |
| 2016-10-03 | Use of GN2_PROFILE | Pjotr Prins | |
| 2016-10-03 | Config: supporting JSON OVERRIDES | Pjotr Prins | |
| 2016-10-03 | Handle JSON override files in startup script | Pjotr Prins | |
| 2016-09-26 | Test: --all switch added | Pjotr Prins | |
| 2016-09-26 | Mechanical Rob: make it possible to run single tests | Pjotr Prins | |
| 2016-09-25 | Testing: looking for a way to run pylmm | Pjotr Prins | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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