| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-12-29 | README: Update invocation command for pytest | Frederick Muriuki Muriithi | |
| Invoke pytest via python so as to ensure that all the relevant modules are found when running tests. | |||
| 2022-11-16 | Add SPARQL_ENDPOINT in examples in README | Munyoki Kilyungi | |
| 2022-09-08 | Recommend pytests in README | Munyoki Kilyungi | |
| * README.md (Testing): Using pytests instead of unittests. | |||
| 2022-09-06 | Update link to continuous deployment. | Arun Isaac | |
| * README.md (Development): Update link to continuous deployment. | |||
| 2022-08-12 | Add a profiling script | Frederick Muriuki Muriithi | |
| Add a script to enable profiling the code. | |||
| 2022-05-05 | Link to continuous deployment in README. | Arun Isaac | |
| * README.md (Development): Link to continuous deployment. | |||
| 2022-03-21 | Fix command in documentation | Frederick Muriuki Muriithi | |
| Add missing argument to the command in the documentation | |||
| 2022-03-18 | README: Update CI badge subdomain. | Arun Isaac | |
| The CI has been migrated from penguin2.genenetwork.org to ci.genenetwork.org. * README.md: Update CI badge subdomain. | |||
| 2022-03-18 | Document configurations | Frederick Muriuki Muriithi | |
| Document the configurations for the service, and how to use them when invoking the service. | |||
| 2022-03-17 | Document how to run tests | Frederick Muriuki Muriithi | |
| Add documentation on how to run the tests - this was no clear from the existing documentation up to this point. | |||
| 2022-02-18 | README: Replace GitHub actions badge with Laminar CI badge. | Arun Isaac | |
| * README.md: Replace GitHub actions badge with Laminar CI badge. | |||
| 2022-01-28 | Revert "bin: Set GN2_PROFILE from GUIX_ENVIRONMENT." | Arun Isaac | |
| This reverts commit f4e336eb1ea526156e112cff97a3ec8137a2bc90. | |||
| 2022-01-28 | Revert "bin: Do not set environment variables set by guix shell." | Arun Isaac | |
| This reverts commit 344e428126b60932bff4c62c5ded8c36519155e8. | |||
| 2022-01-28 | Revert "README: Document `guix shell' development process." | Arun Isaac | |
| This reverts commit e0a260b0de55fbea0c507eb0ca5fbdc3c1a825c0. | |||
| 2022-01-06 | README: Document `guix shell' development process. | Arun Isaac | |
| * README.md: Clean up and document `guix shell' development process. | |||
| 2022-01-06 | README: Fix typo. | Arun Isaac | |
| * README.md: Change clinians to clinicians. | |||
| 2022-01-06 | bin: Do not set environment variables set by guix shell. | Arun Isaac | |
| The Guix python package accepts GUIX_PYTHONPATH instead of PYTHONPATH. `guix shell' sets GI_TYPELIB_PATH, GIO_EXTRA_MODULES, GUIX_GTK3_PATH, GUIX_PYTHONPATH, PATH, R_LIB_SITE and XDG_DATA_DIRS when necessary. There is no need to set these environment variables explicitly. * bin/genenetwork2: Do not set GI_TYPELIB_PATH, GIO_EXTRA_MODULES, GUIX_GTK3_PATH, PATH, PYTHONPATH, R_LIBS_SITE and XDG_DATA_DIRS. * README.md [Development]: Remove paragraph on injecting python modules locally. | |||
| 2022-01-06 | bin: Set GN2_PROFILE from GUIX_ENVIRONMENT. | Arun Isaac | |
| `guix shell' sets the profile path in an environment variable---GUIX_ENVIRONMENT. There is no need to pass it explicity as an input in GN2_PROFILE. * README.md: Remove all references to GN2_PROFILE. * bin/genenetwork2: Set GN2_PROFILE from GUIX_ENVIRONMENT. Do not check the value of GN2_PROFILE now that it is set automatically. Remove all references to GN2_PROFILE in example invocations. | |||
| 2021-12-01 | Figure out that we are using the wrong db_webqtl_s! | Pjotr Prins | |
| 2021-12-01 | Introduce GN3_PYTHONPATH environment variable | Pjotr Prins | |
| 2021-10-28 | README.md: Add GN_PROXY_URL and GN3_LOCAL_URL to documentation | BonfaceKilz | |
| 2021-08-24 | README: minor edits | Pjotr Prins | |
| 2021-01-13 | Just some tweaks to first paragrfaph | robwwilliams | |
| 2020-09-22 | Add testing badge on README | BonfaceKilz | |
| * README.md: Badge becomes green on successful runs. | |||
| 2020-09-22 | Update documentation on testing and CI | BonfaceKilz | |
| * README.md: Update section on testing. * doc/docker-container.org: Add it. | |||
| 2020-07-27 | Merge branch 'testing' into testing | Pjotr Prins | |
| 2020-07-26 | Document how to run tests | BonfaceKilz | |
| * README.md: - Add details on how to run unit tests - Update link that points to Mechanical Rob | |||
| 2020-07-25 | Updating docs and show how to include a local Python module | Pjotr Prins | |
| 2020-04-26 | Merge master and testingmaster | Pjotr Prins | |
| 2019-02-18 | typo | Pjotr Prins | |
| 2019-02-18 | Note on running tests | Pjotr Prins | |
| 2018-09-05 | ELASTICSEARCH settings and fix runserver.py to run without gunicorn | Pjotr Prins | |
| 2018-04-16 | Docs on elasticsearch use | Pjotr Prins | |
| 2018-04-12 | README and docs | Pjotr Prins | |
| 2016-06-14 | Adding documentation | Pjotr Prins | |
| 2016-06-14 | Add JOSS citation | Pjotr Prins | |
| 2016-06-14 | Add JOSS citation | Pjotr Prins | |
| 2016-06-09 | README: capitalization | Pjotr Prins | |
| 2016-06-02 | Paper: addressing JOSS requirements for contribution, where to find | Pjotr Prins | |
| documentation and testing materials https://github.com/openjournals/joss-reviews/issues/25 | |||
| 2016-05-29 | Updated webserver link | Pjotr Prins | |
| 2016-05-29 | Citation | Pjotr Prins | |
| 2016-05-29 | Add zenodo doi | Pjotr Prins | |
| 2016-04-20 | README: point to gn-latest SHA values | Pjotr Prins | |
| 2016-04-20 | Main README | Pjotr Prins | |
| 2016-04-20 | README | Pjotr Prins | |
| 2016-04-20 | README | Pjotr Prins | |
| 2016-04-20 | README | Pjotr Prins | |
| 2016-04-20 | Simplify the README so people can actually READ it. | Pjotr Prins | |
| 2016-04-20 | [PATCH 023/100] WIP fixing all paths | Pjotr Prins | |
| 2015-06-26 | Added license file | pjotrp | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |