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2019-06-28Added regression lines to correlation scatterplotszsloan
Fixed bug when doing correlations of non-phenotype traits against phenotype datasets Changed color of manhattan plot points (subject to change)
2019-06-25Added dropdown generation to REST API and switched to using it to generate ↵zsloan
the main search page dropdown
2019-06-24Fixed issue that caused search result pages to not work in IEzsloan
2019-06-24Fixed issue that caused API genotypes query to not work when no limit_to setzsloan
2019-06-24Got non-LOCO GEMMA mapping working with gemma-wrapper (so caching should ↵zsloan
work for that now) Fixed position digits and row highlighting on interval analyst table Updated default MAF to 0.05 Updated footer text
2019-06-18Fixed issue with sorting involving 0's on trait pagezsloan
Fixed links to dataset info pages in search results and correlation results pages
2019-06-18Changed the text displayed on search results pagezsloan
Added some links to index page Removed footer from search results page
2019-06-18Phenotype results with long descriptions/authors look much better now + ↵zsloan
added some links to index page
2019-06-14Added some metadata to top of global search resultszsloan
2019-06-12Fixed error when zooming in on chromosome for rat mapping resultszsloan
2019-06-09Had an extra parenthesis to removezsloan
2019-06-09Issue with encoding should be fixed for both global searches nowzsloan
2019-06-09Fixed javascript error with phenotype global searchzsloan
2019-06-09Fixed issue that caused heatmap to not work (needed to tell it to use reaper ↵zsloan
for generating genotype object) Fixed issue that caused *all* collection page functions to not load correctly (datatables wasn't loading correctly due to a new column being added)
2019-06-09Added fix for error when records don't have mean expression in global searchzsloan
2019-06-07Global search and correlation results can handle null expression nowzsloan
2019-06-06Made some changes to REST API, including adding limit_to option to mappingzsloan
2019-06-06Replaced ISNULL with IFNULL (which is the correct version for MySQL)zsloan
Changed the query form for getting a species' groups
2019-06-05Ensured that a string is returned for SQL fields that can potentially be nullzsloan
2019-06-05Needed to replace single quotes with double quotes for JSON outputzsloan
2019-06-05Additive effects now display for manhattan plots when availablePjotr Prins
2019-06-05Issue where manhattan plot points went past the edge of the plot should be ↵zsloan
fixed now
2019-06-05Fixed issue that caused interval mapping to not work because the python ↵zsloan
implementation of the reaper Dataset object doesn't include the addinterval method (so for those situations I still use reaper) Fixed issue where the last chromosome wasn't displayed for mapping results (though still need to fix issue where points are drawn too far to the right when a specific range is viewed)
2019-06-04Updated drop-downs (this probably needs to be separated out of the git ↵zsloan
repository)
2019-06-04Changed the logic for deciding y axis digits to deal with situations where ↵zsloan
the range is less tan 0.4; not sure if more than this needs to be accounted for
2019-06-04Fixed issue with probability plot y axis digitszsloan
2019-06-04Merge branch 'api' of github.com:zsloan/genenetwork2 into testingzsloan
2019-06-04Added GeneMANIA linkzsloan
Fixed issue that caused error when creating UCSC RefSeq link Fixed issue that sometimes caused an error for phenotype searches Changed some text on collections page
2019-05-31Merge branch 'api' of github.com:zsloan/genenetwork2 into apizsloan
2019-05-31Added option to get just trait names from traits query, and also fixed ↵zsloan
sample_data query to avoid duplicates
2019-05-31Minor changeszsloan
2019-05-31Migrate to newer HTMLGenMuriithi Frederick Muriuki
* Migrate to HTMLGen that supports both Python2 and Python3.
2019-05-29Merge branch 'api' of github.com:zsloan/genenetwork2 into apizsloan
2019-05-29Added option to get traits from dataset to APIzsloan
2019-05-29Added info for fetching trait listzsloan
2019-05-24Fixed issue where change to making sample table unchecked made all figures ↵zsloan
not show up
2019-05-24Merge branch 'testing' of github.com:genenetwork/genenetwork2 into apizsloan
2019-05-24Merge branch 'api' of github.com:zsloan/genenetwork2 into apizsloan
2019-05-24Added status to error messageszsloan
2019-05-24Put API readme in correct placezsloan
2019-05-24Return JSON error instead of html nowzsloan
2019-05-24Made a few changes to trait page:zsloan
- Changed y axis digits for some figures - Changed title for some figures to trait ID - Removed Min Expr filter when correlating with phenotypes - Changed some button colors - Made sample table rows highlightable
2019-05-24Added currently api progress, which will henceforth be appropriately ↵zsloan
committed in this branch
2019-05-24Replaced qtlreaper Dataset object with python objectzsloan
2019-05-23Fixed issue where some descriptions caused an errorzsloan
2019-05-17Made check for trait IDs a bit more secure to hopefully avoid any errors ↵zsloan
similar to the previous one with a missing unigene id
2019-05-17Fixed issue that caused error for traits with no unigene idzsloan
2019-05-14Added all of the third party links from GN1zsloan
Fixed issue with the script that generates the drop-down menus where phenotype/genotype datasets wouldn't show up for species without any mRNA assay datasets Added icon for smartphones/tablets Made error more informative for main search Added gene symbol column to collections (need to add something that removes the column if it's all empty)
2019-05-08Fixed issue where descriptions sometimes had unicode characters appear strangelyzsloan
2019-05-07Added link to GeneBridge to trait pagezsloan
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