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2015-03-19Merge branch 'master' of https://github.com/zsloan/genenetwork2 into zsloanPjotr Prins
2015-03-18Begun adding pair scan option, fixed bug if no closest markers foundzsloan
2015-03-18.cross files should not be in the repositoryzsloan
2015-03-18Fixed the borky genofilezsloan
2015-03-18Adding a fix to purge non-existing markers as covariates for the R/qtl analysiszsloan
2015-03-18Merge branch 'pylmm0002'Pjotr Prins
Conflicts: wqflask/wqflask/my_pylmm/pyLMM/lmm.py
2015-03-18Merge branch 'master' of https://github.com/zsloan/genenetwork2Pjotr Prins
2015-03-18Merge branch 'master' of https://github.com/zsloan/genenetwork2 into zsloanPjotr Prins
2015-03-18Some more minor code/comment updates, making code a little shorterDannyArends
2015-03-18Cleaning up some of the code, updating output and adding/changing commentsDannyArends
2015-03-18Merge branch 'master' of https://github.com/zsloan/genenetwork2Pjotr Prins
2015-03-18Tagging 0.50-gn2-pre2Pjotr Prins
2015-03-18Add uses debugPjotr Prins
2015-03-18Aligned gn2 handlers with standalonePjotr Prins
2015-03-18Cleaned up gwas.py to use uses and moved Redis call back into lmm.pyPjotr Prins
2015-03-18Progress handlerPjotr Prins
2015-03-18Replace progress meterPjotr Prins
2015-03-18Warning to stderrPjotr Prins
2015-03-18Warning to stderrPjotr Prins
2015-03-18Introduce sugar for callbacksPjotr Prins
2015-03-18Added uses as syntax sugar for callbacksPjotr Prins
2015-03-18Introducing callbacksPjotr Prins
2015-03-18Add callback handlersPjotr Prins
2015-03-17Added r function for setting genotypes and generating the cross filezsloan
2015-03-17Moved print statement for non-humans only inside if statementzsloan
2015-03-17Merge branch 'master' of github.com:pjotrp/genenetwork2 into pjotr_testzsloan
2015-03-17Added permutations and cleaned code for rqtlzsloan
2015-03-17Merge branch 'master' of https://github.com/zsloan/genenetwork2 into pylmm0001Pjotr Prins
2015-03-17Converting an absolute path to a relative pathDannyArends
2015-03-17Added files for bootstrap icons and scatter-plot css fileZachary Sloan
2015-03-17Improved rqtl codeZachary Sloan
2015-03-17Moved scatter-plot to the right of options instead of belowZachary Sloan
2015-03-17Moved setting of geno variable into non-humanZachary Sloan
2015-03-17Release 0.50-gn2-pre1Pjotr Prins
2015-03-17GWAS: sort results so we always get the same listPjotr Prins
2015-03-17README: Started release information and versioning of modulePjotr Prins
2015-03-17runlmm: Explicit handling of missing phenotypesPjotr Prins
2015-03-17GWAS: should be correct nowPjotr Prins
2015-03-17GWAS: one result is missingPjotr Prins
2015-03-17lmm1: fixed a few regressions introduced while debuggingPjotr Prins
2015-03-17lmm.py: bring to original statePjotr Prins
2015-03-17GWAS multi-core: Tweak queuePjotr Prins
2015-03-16GWAS: results get returnedPjotr Prins
2015-03-16Adding GWAS codePjotr Prins
2015-03-16Adding multi-core GWASPjotr Prins
2015-03-16Output addedPjotr Prins
2015-03-16Refactoring eigenvalue KvaKvePjotr Prins
2015-03-15CommentPjotr Prins
2015-03-15A little cleanupPjotr Prins
2015-03-15Added multi-core kinship supportPjotr Prins
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