| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2023-03-20 | Add link to diff page when sample-data is updated | Munyoki Kilyungi | |
| * wqflask/wqflask/metadata_edits.py (update_phenotype): Add url to diff page in flash message. * wqflask/wqflask/templates/edit_phenotype.html: Render flash message with HTML. | |||
| 2023-03-20 | Fix minor pep-8 issues | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-03-20 | Disable editing case-attributes | Munyoki Kilyungi | |
| ATM, editing case-attributes is very buggy. * wqflask/tests/integration/wqflask/test_metadata_edits.py: Delete. * wqflask/wqflask/decorators.py: Remove: gn3.authentication.get_groups_by_user_uid import. (case_attributes_edit_access): Delete. * wqflask/tests/integration/wqflask/test_metadata_edits.py: Remove wqflask.decorators.case_attributes_edit_access, gn3.db.case_attributes.get_case_attributes, gn3.db.case_attributes.get_unreviewed_diffs, gn3.db.case_attributes.insert_case_attribute_audit, gn3.db.case_attributes.reject_case_attribute and gn3.db.case_attributes.approve_case_attribute. (display_phenotype_metadata): Remove headers arg when rendering template. (update_phenotype): Remove case attribute headers list when updating a phenotype. (show_case_attribute_columns, update_case_attributes): Delete. (reject_case_attribute_data, approve_case_attribute_data): Ditto. * wqflask/wqflask/templates/edit_phenotype.html: Remove link that shows all the listed case-attributes. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-03-20 | oauth2: Load menu and populate dropdown | Frederick Muriuki Muriithi | |
| In order to enable searching through the existing datasets for linking with the auth system, we need a way to filter the data. In this commit, I load the menu and load it onto a dropdown box as a proof of concept to give an idea of some of the filters I can use down the road to fetch the data. This commit breaks the data-linking code. I will need to rework the data-linking code entirely to get it working again. | |||
| 2023-03-20 | oauth2: Pass the offset in the query | Frederick Muriuki Muriithi | |
| 2023-03-20 | oauth2: phenotypes: list/link at trait level | Frederick Muriuki Muriithi | |
| List/link the phenotypes at the trait level rather than at the dataset level. | |||
| 2023-03-20 | corrs: Handle JSONDecodeError | Frederick Muriuki Muriithi | |
| In the case that the JSON output from the correlations computation is malformed, we capture that into a new exception an re-raise it to help with debugging and fixing issues. | |||
| 2023-03-18 | oauth2: resources: toggle whether a resource is public or not. | Frederick Muriuki Muriithi | |
| 2023-03-18 | oauth2: resources: Disallow duplicate resource names. | Frederick Muriuki Muriithi | |
| 2023-03-17 | Fix correlation bug caused by a NULL UPDATE_TIME in the DB | zsloan | |
| 2023-03-16 | Make the two Submit Change buttons consistent | zsloan | |
| 2023-03-16 | Edit dataset dropdown JS to handle Species sub-categories | zsloan | |
| 2023-03-16 | Change the UI for the phenotype editing page | zsloan | |
| Edit Sample Data and Edit Metadata are now two separate sections, and Edit Sample Data appears first | |||
| 2023-03-15 | minor globalsearch enhancement | Alexander_Kabui | |
| 2023-03-15 | Change global search form id to gsearchform instead of searchform (since ↵ | zsloan | |
| searchform is already used for the regular search) | |||
| 2023-03-15 | Replace REGEXP with LIKE in regular searches | zsloan | |
| 2023-03-15 | Fix bug caused by RRIDs parseable as ints | zsloan | |
| 2023-03-14 | fix responsiveness | Alexander_Kabui | |
| 2023-03-14 | add shadow and border effect autocomplete | Alexander_Kabui | |
| 2023-03-10 | oauth2: Extend scope for GN2 oauth2 client. | Frederick Muriuki Muriithi | |
| 2023-03-09 | Merge pull request #772 from genenetwork/chores/code-refactoring | Alexander Kabui | |
| Chores/code refactoring | |||
| 2023-03-09 | code cleanupchores/code-refactoring | Alexander_Kabui | |
| 2023-03-09 | delete recent search handler | Alexander_Kabui | |
| 2023-03-09 | Merge pull request #771 from genenetwork/chores/ui-enhancements | Alexander Kabui | |
| Chores/UI enhancements | |||
| 2023-03-09 | fix miniform search id | Alexander_Kabui | |
| 2023-03-09 | link to hint page;update form selector | Alexander_Kabui | |
| 2023-03-08 | Add DataAnalyzer.py script to maintenance scripts | zsloan | |
| 2023-03-08 | Account for truncated symbol lengths when setting the max_width for the ↵ | zsloan | |
| symbol column | |||
| 2023-03-08 | Change the way table width is set for search results table | zsloan | |
| 2023-03-08 | Merge pull request #770 from genenetwork/feature/search-history | Alexander Kabui | |
| Feature/autocomplete global search | |||
| 2023-03-08 | integrate to global searchfeature/search-history | Alexander_Kabui | |
| 2023-03-08 | add autocomplete css code | Alexander_Kabui | |
| 2023-03-08 | add autocomplete js code | Alexander_Kabui | |
| 2023-03-08 | Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵ | Alexander_Kabui | |
| feature/search-history | |||
| 2023-03-07 | fix:Enter key in search field. (#769) | Alexander Kabui | |
| * enable search on keypress enter * add default value for search field * forward search queries | |||
| 2023-03-07 | oauth2: group_roles: Enable adding/deleting privileges | Frederick Muriuki Muriithi | |
| 2023-03-07 | oauth2: Include 'user' in requested scopes. | Frederick Muriuki Muriithi | |
| 2023-03-07 | oauth2: resources: unassign role on resource from user. | Frederick Muriuki Muriithi | |
| 2023-03-06 | oauth2: resources: assign role to user on resource. | Frederick Muriuki Muriithi | |
| 2023-03-06 | oauth2: resources: List all users with access to the resource. | Frederick Muriuki Muriithi | |
| 2023-03-06 | oauth2: group roles: commit missing template. | Frederick Muriuki Muriithi | |
| 2023-03-03 | oauth2: group role: View group role details. | Frederick Muriuki Muriithi | |
| 2023-03-03 | oauth2: Bugfix: Ensure to send the list correctly. | Frederick Muriuki Muriithi | |
| 2023-03-03 | oauth2: enable creation and listing of group roles. | Frederick Muriuki Muriithi | |
| 2023-03-01 | Show the log2 of the Mean column when Mean > 100 for Gene global search | zsloan | |
| 2023-03-01 | hint/autocomplete on global search | Alexander_Kabui | |
| 2023-03-01 | show user history on global search | Alexander_Kabui | |
| 2023-02-28 | Improve UI for mapping link | zsloan | |
| The link is now always displayed, but it is only saved (for longer than 1 hour) if the user clicks Copy and Share (which automatically copies the link) The width of the input field (in ch) is multiplied by 0.95 because it will always be a bit shorter than the length of the link in ch (which multiplies its length by the width of the character 0). This is the best solution I could come up with for setting the width of the field. | |||
| 2023-02-28 | Move the code that caches mapping inputs to views.py so it can more easily ↵ | zsloan | |
| include the temp_uuid (plus it's more consistent with the way caching has worked elsewhere) Also changed the default time from two months to one month | |||
| 2023-02-28 | Change Redis.hset to Redis.set so each caching can have a separate expiration | zsloan | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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