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2021-05-10Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-05-10Change loading.html to write genotype filename even when there was no ↵zsloan
selection for it, and also to have 'genotype file' be lowercase to match all other metadata labels
2021-05-10fix f string typouditgulati
2021-05-10use f string in gsearchuditgulati
2021-05-10add ServerSideTable to gsearch geno and pheno tablesuditgulati
2021-05-10move geno chr, mb to gsearch main query for phenotype searchuditgulati
2021-05-10update gsearch pheno searchuditgulati
2021-05-10minor-fix:remove debug statementsAlexander Kabui
2021-05-10Merge branch 'testing' into feature/integrate-correlation-apiAlexander Kabui
2021-05-10use new correlation code in endpointAlexander Kabui
2021-05-10minor changes to interfaceAlexander Kabui
2021-05-10revert python pathAlexander Kabui
2021-05-10remove debug statementsAlexander Kabui
2021-05-10add previous endpoint for correlationAlexander Kabui
2021-05-09fix:add lit for trait listAlexander Kabui
2021-05-08tests: test_gen_menu: Remove app_context initialisationBonfaceKilz
This is no longer required since the global object "Flask.g.db" is no longer coupled to the gen_menu module.
2021-05-08utility: startup_config: Use python3 f-stringsBonfaceKilz
2021-05-08utility: startup_config: Break up long import statementBonfaceKilz
2021-05-08utility: startup_config: Remove dead commentsBonfaceKilz
2021-05-08wqflask: Process MySQL URI and store the result in the global scopeBonfaceKilz
2021-05-08api: gen_menu: Inject MySQL conn object and use that for queriesBonfaceKilz
2021-05-08api: router: Inject MySQL object when fetching menu itemsBonfaceKilz
2021-05-08tests: test_gen_menu: Update failing testsBonfaceKilz
Update tests to use (and mock) the injected MySQL connection object.
2021-05-07Display cofactors = None on the loading page if there are no cofactorszsloan
2021-05-07Check if num_bootstrap is in start_vars, since it won't exist for ↵zsloan
non-qtlreaper methods
2021-05-07Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-05-07Fixed issue that caused /submit_trait page to not load properlyzsloan
2021-05-07Add typing + autopep8 formattingAlexander Kabui
2021-05-07remove comments prettify htmlAlexander Kabui
2021-05-07minor fixAlexander Kabui
2021-05-07fix tweets widthAlexander Kabui
2021-05-07modify blog list uiAlexander Kabui
2021-05-07add function for fetching blogsAlexander Kabui
2021-05-07add template for blogsAlexander Kabui
2021-05-07add blogs blueprintAlexander Kabui
2021-05-06Forgot to add brackets around list comprehension, so added themzsloan
2021-05-06Merge pull request #565 from zsloan/bug/fix_rqtl_covariateszsloan
Stopped using the scanone function pointer when doing R/qtl mapping, …
2021-05-06Used a list comprehension for perm_vals as mentioned in Bonface's commentzsloan
2021-05-06Merge branch 'testing' into bug/fix_rqtl_covariateszsloan
2021-05-06Because each permutations value is returned as an array, need to just take ↵zsloan
the first item to convert to numbers
2021-05-06Fixed vertical position of loading text so that it should be positioned in ↵zsloan
the center vertically
2021-05-06Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-05-06Include group and species in form parameters for mapping results page, so ↵zsloan
they can be included in the loading page if the map is reloaded
2021-05-06Include group/species in form parameters on trait page so they can be ↵zsloan
displayed on mapping loading page
2021-05-06Changed the way metadata is displayed on the mapping loading pagezsloan
2021-05-06Delete model.py and it's referencesBonfaceKilz
* wqflask/wqflask/database.py (init_db): Remove references to "wqflask.model" * wqflask/wqflask/model.py: Delete it.
2021-05-06wqflask: user_manager: Delete usermanager.py and it's referencesBonfaceKilz
This module is not used anywhere.
2021-05-06wqflask: database: Remove loggingBonfaceKilz
2021-05-05Added whether GEMMA is using LOCO to mapping loading pagezsloan
2021-05-05Added genotype file to mapping loading pagezsloan
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