| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2017-05-22 | Added submit trait to header menu and fixed some minor issues with Network ↵ | zsloan | |
| Graph interface | |||
| 2017-05-22 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan | |
| 2017-05-22 | Added print lines showing url to views.py and updated dataset menu json file | zsloan | |
| 2017-05-22 | Merge pull request #254 from pjotrp/diet-merge | zsloan | |
| Merge from the diet branch | |||
| 2017-05-21 | Merge from the diet branch. | Pjotr Prins | |
| * refactored ./bin/genenetwork2 and /etc/default_settings - better detection of Guix - removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS - removing some default settings, such as PYLMM_COMMAND - rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY - added GUIX_JS_PATH for JS modules * Added documentation on installing binary GN2 * Updated Twitter board to latest version in Guix - it had broken * Updated many tools in the latest Guix profile | |||
| 2017-05-16 | Fixed issue that caused mapping to not work for R/qtl | zsloan | |
| Updated dataset menu dropdown info Began adding option to download statistics figures as PNG | |||
| 2017-05-08 | Merge pull request #253 from lyan6/master | zsloan | |
| renamed: gn2_lei.conf -> gn2-lei.conf | |||
| 2017-05-08 | corr_scatter_plot update (use nvd3) | Lei Yan | |
| 2017-05-04 | renamed: gn2_lei.conf -> gn2-lei.conf | Lei Yan | |
| 2017-05-04 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Lei Yan | |
| 2017-04-25 | Fixed issue with correlation result trait links if target dataset is ↵ | zsloan | |
| different from base dataset Improved collection list and view table appearances Added question mark image for glossary entries in table headers Fixed issue where extra decimal place sometimes appeared in bar chart Y axis tick values | |||
| 2017-04-17 | Added option to remove collections from collection list page | zsloan | |
| Improved appearance of search result and collection tables | |||
| 2017-04-06 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Lei Yan | |
| 2017-04-05 | Added images directory with various gifs, etc | zsloan | |
| 2017-04-05 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into development | zsloan | |
| 2017-04-05 | Merge pull request #251 from lyan6/master | zsloan | |
| Add meta info (X axis, Y axis) for Correlation Scatterplot | |||
| 2017-04-05 | - Temporary traits can be created, viewed, and added to collections | zsloan | |
| - Correct PCA trait data is created but can't be saved yet - Added inner margins by increasing xDomain and yDomain of probability plot on trait page - Increased X/Y-axis label font size - Turned "processes" to 0 on runserver.py for PROD setting, since it doesn't work with threading - Improved appearance of correlation page table - Added links to github to index page - Removed js_data from GEMMA/PLINK mapping results, since it isn't used for those - Removed "Tissue" from trait page for phenotype traits | |||
| 2017-04-04 | Change scatterplot title font size | Lei Yan | |
| 2017-04-04 | Change scatterplot image buffer/inner | Lei Yan | |
| 2017-04-04 | align X and Y meta info | Lei Yan | |
| 2017-03-30 | Change "Correlation Scatterplot" size, font, color, etc. | Lei Yan | |
| 2017-03-16 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 | Lei Yan | |
| 2017-03-16 | Merge /home/zas1024/gene | Lei Yan | |
| 2017-03-16 | Add meta info (X axis, Y axis) for Correlation Scatterplot | Lei Yan | |
| 2017-02-09 | Merge pull request #247 from zsloan/master | zsloan | |
| A couple minor commits | |||
| 2017-02-09 | Fixed issue where I forgot to add GeneticType to the query_for_group query ↵ | zsloan | |
| for non-mRNA Assay datasets Increased digits of some Basic Statistics values from 2 to 3 | |||
| 2017-02-09 | Changed second column header to 'Value' when there's only one sample group | zsloan | |
| 2017-02-09 | Merge pull request #246 from zsloan/master | zsloan | |
| Added genetic_type to DatasetGroup object to differentiate between wh… | |||
| 2017-02-09 | Added genetic_type to DatasetGroup object to differentiate between which ↵ | zsloan | |
| groups should show dominance effect Minor changes/improvements for trait page Updated dataset_menu_structure.json | |||
| 2017-02-08 | Merge pull request #245 from zsloan/master | zsloan | |
| Changed the way .fam files are written/read, which fixes the issue wi… | |||
| 2017-02-08 | Changed the way .fam files are written/read, which fixes the issue with ↵ | zsloan | |
| GEMMA mapping accuracy. | |||
| 2017-02-06 | Merge pull request #242 from zsloan/master | zsloan | |
| Mapping results figure now correctly says whether GEMMA was used as m… | |||
| 2017-02-06 | Mapping results figure now correctly says whether GEMMA was used as mapping ↵ | zsloan | |
| method. | |||
| 2017-02-06 | Merge pull request #241 from zsloan/master | zsloan | |
| Removed reference to trait_submission since it isn't used yet | |||
| 2017-02-06 | Merge branch 'development' of github.com:zsloan/genenetwork2 | zsloan | |
| 2017-02-06 | Commented out reference to trait_submission since it's not used yet | zsloan | |
| 2017-02-06 | Merge pull request #240 from zsloan/master | zsloan | |
| Various changes | |||
| 2017-02-06 | Merge branch 'master' of github.com:zsloan/genenetwork2 | zsloan | |
| 2017-02-06 | Fixed appearance of several tables (search, mapping results, sample data) | zsloan | |
| Temporarily removed second sample table for CFW traits Fixed location of global search bar to work with wider screens | |||
| 2017-02-02 | Merge /home/zas1024/gene | Lei Yan | |
| 2017-01-26 | Merge pull request #237 from zsloan/master | zsloan | |
| Various changes/fixes | |||
| 2017-01-26 | Merge pull request #1 from genenetwork/testing | zsloan | |
| Various changes/fixes | |||
| 2017-01-26 | GEMMA now works with CFW data (had to update where it looks for the input ↵ | zsloan | |
| files and how it writes the phenotype file) Y-axis for GEMMA now says -log(p) Updated the style of the trait sample data table in the trait page Updated dataset_select_menu_orig.js to also build just the Species and Group drop-downs for the trait input page (as opposed to all 4 drop-downs) Updated dataset menu json file Added option to show and hide columns to regular search page using colVis Changed regular and global search result table styles/column widths Began work on user trait submission code (not working yet though) Began work on static loading page for mapping results | |||
| 2017-01-03 | Fixed appearance of samples tables in show_trait to look like all the other ↵ | zsloan | |
| tables Disabled sorting for the first column (check box) of the samples tables | |||
| 2016-12-15 | Merge pull request #234 from zsloan/master | zsloan | |
| Various changes | |||
| 2016-12-15 | Changed table appearance | zsloan | |
| Updated dataset_menu_structure.json | |||
| 2016-12-13 | Fixed a problem related to the last commit that caused a problem when ↵ | zsloan | |
| loading a collection or doing ctl analysis | |||
| 2016-12-12 | Moved a bunch of functions out of the GeneralTrait class that didn't need to ↵ | zsloan | |
| be there and changed the code that calls them accordingly Improved loadings plot on the correlation matrix page to look like GN1's figure (though it's vector and GN1's was static) Removed some unused code from show_trait.py changed appearance of table headers some, though needs a little more work Updated dataset_menu_structure.json | |||
| 2016-11-29 | Fixed loadings plot so it looks like the GN1 figure | zsloan | |
| 2016-11-21 | Fixed correlation page so it correctly sorts by the scientific notation for ↵ | zsloan | |
| sample p Set default sort for correlation page to sample p Improved appearance of correlation matrix some by decreasing line height Added labels to each figure/table on the correlation page | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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