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Tick marks are now correct and in intervals of 25 for each chromosome
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so they can be pulled to the new EC2 server
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with the location of points on the x-axis
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Split create_graph into many functions
Added a buffer to the x and y dimensions in order to add
tick labels for the x and y axis
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Hovering over a point automatically searches for its corresponding
marker in the data table
Added headers for the plot and table
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value to appear above the plot
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its style
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chromosomes
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using d3.js
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for all of our genofiles
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with Nick's code
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and their corresponding markers to be used in the table of qtl results
and other figures
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that loads the json files, converts them into the relevant numpy arrays,
and passes them into Nick's code (which is returning results that may
or may not be correct, but is at least running)
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pass to Nick's code and changed the prep_data.py code to operate on
a list of phenotype values instead of a textfile with the values
delimited
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them to the format used by nick's code
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our data
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page to work, but will change all references to the dataset name to
'dataset_name' in future to avoid confusion between the dataset name
and the actual dataset object
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related to fd
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new server
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related to installing a new instance of GN
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Worked with correlation code; got to the code that
begins to do the actual correlations
Created a function "get_dataset_and_trait" in
the new file "helper_functions.py" because the
code initializing the dataset and trait objects
was repeated in multiple places
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install to work
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problem with rpy2
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plot figure`
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Committing before trying to combine all the manhattan plot
segments
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