Age | Commit message (Collapse) | Author | |
---|---|---|---|
2014-11-06 | Upgraded to bootstrap 3 and updated a lot of html to reflect this | Zachary Sloan | |
2014-11-05 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2014-11-04 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2014-10-29 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2014-10-29 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2014-10-29 | Merge /home/gn2/gene | Lei Yan | |
2014-10-24 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2014-10-24 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2014-10-17 | Merge /home/zas1024/gene | Zachary Sloan | |
2014-10-17 | Added reference, policies, and links pages | Zachary Sloan | |
Improved the appearance of the header menu and "title bar" | |||
2014-10-09 | Merge /home/zas1024/gene | Zachary Sloan | |
2014-10-09 | Added config file | Zachary Sloan | |
2014-10-09 | Fixed error with loading the trait page for phenotype traits | Zachary Sloan | |
2014-10-02 | Fixed an error when there's no locus for mRNA expression traits | Zachary Sloan | |
2014-09-29 | Found the problem that was causing several collections functions to not work | Zachary Sloan | |
and fixed it | |||
2014-09-22 | Adding the port as a parameter to runserver; this should just be temporary until | Zachary Sloan | |
I figure out how to get it to read the port from the config file instead Using runserver.py instead of secure_server.py because of an error with the latter that I haven't figured out how to fix yet Improved the appearance of several of the tables | |||
2014-08-28 | Added a validation that warns the user of the number of permutations for | Zachary Sloan | |
pyLMM is more than 20 (due to speed) Changed the port in the flask settings to 5002 due to adding the new production server branch | |||
2014-08-25 | Merge /home/lei/gene | Zachary Sloan | |
2014-08-25 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2014-08-25 | Merge /home/lei/gene | Zachary Sloan | |
2014-08-25 | Added permutations to pyLMM | Zachary Sloan | |
2014-08-21 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2014-08-21 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2014-08-21 | Added the option to display mapping results as either an interval mapping | Zachary Sloan | |
or manhattan plot Fixed a few minor bugs | |||
2014-08-15 | Permutations now work with rqtl | Zachary Sloan | |
2014-08-12 | Fixed the scrollable data tables for the show trait page | Zachary Sloan | |
Added the option to display the rqtl results (and soon other mapping results) as either a manhattan plot or "interval map" style curve chart Removed a couple unnecessary javascript imports Changed the function in helper_functions.py that creates the trait and dataset objects, making it to where the trait object also gets qtl info Fixed color by trait after it was broken by the "scatterplot matrix" function | |||
2014-08-04 | Fixed another minor issue with the heatmap where the original curve wouldn't ↵ | Zachary Sloan | |
be removed | |||
2014-08-04 | Fixed a problem with the heatmap after moving reorgLodData function to ↵ | Zachary Sloan | |
panelutils.js Got rqtl working with converted BXD genofile and also got composite mapping working | |||
2014-07-25 | Got the heatmap/lodchart combo working | Zachary Sloan | |
Started working on getting rqtl working as another mapping method | |||
2014-07-21 | Fixed issue where sample values were ordered on the trait page | Zachary Sloan | |
2014-07-21 | Heatmap is now working (using Karl's qtlcharts code), but still need | Zachary Sloan | |
to figure out the issue with the color range | |||
2014-07-21 | Merge /home/lei/gene | Zachary Sloan | |
2014-07-18 | Forgot to add the heatmap __init__.py file in the last commit | Zachary Sloan | |
2014-07-18 | Just did some more work on the heatmap | Zachary Sloan | |
2014-07-18 | Merge /home/zas1024/gene | Lei Yan | |
Conflicts: wqflask/base/data_set.py | |||
2014-07-18 | Added outlier highlighting | Zachary Sloan | |
Changed order of tabs in statistics panel on trait page Started working on heatmap | |||
2014-07-18 | Correlation table for phenotypes is working | Lei Yan | |
2014-07-14 | Test | Lei Yan | |
2014-07-14 | Merge /home/zas1024/gene | Lei Yan | |
Conflicts: wqflask/wqflask/static/new/javascript/dataset_select_menu.js wqflask/wqflask/templates/corr_scatter_plot_old.html | |||
2014-07-14 | Test again | Zachary Sloan | |
2014-07-14 | Testing commit of HSNIH_copy.geno | Zachary Sloan | |
2014-07-14 | Made interval map zoom look better | Zachary Sloan | |
Started creating probability plot for show trait page Added outlier detection message when user does mapping | |||
2014-07-09 | Updated coffeescript, svg export working fine, interval mapping zoom working | Zachary Sloan | |
2014-06-25 | Added Karl's correlation matrix code | Zachary Sloan | |
Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait | |||
2014-06-12 | Long overdue of commit to changes that add a scatter plot to the correlation ↵ | Zachary Sloan | |
page and let you select a trait from your collection on the trait page and do a scatter plot against that triat as well. There are a number of accompanying js and css files written by Karl Broman that are needed for these features. The option to compare against more than just one trait still needs to be added for the trait page scatterplot function | |||
2014-06-06 | Implimented Karl Broman's lodchart code for the interval mapping function. | Zachary Sloan | |
Suggestive/significant bars and additive effect curve added | |||
2014-05-19 | Fixed sorting on the show trait page | Zachary Sloan | |
Added/improved the x and y axis on the bar graph and histogram GEMMA working but still really slow | |||
2014-05-05 | Committing a bunch of changes related to integrating GEMMA and | Zachary Sloan | |
adding the correlation matrix page | |||
2014-03-26 | Got anonymous collections working correctly | Zachary Sloan | |
Got results for the HSNIH and CANDLE marker regression pages (still some issues with the manhattan plot) | |||
2014-03-05 | Improved load_genotypes.py | Lei Yan | |
Committer: Lei Yan <lei@penguin.uthsc.edu> On branch master |