genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2020-11-26	add edit button in glossary page	Alexander Kabui

2020-11-26	register view,policies blueprint	Alexander Kabui

2020-11-26	add policies page	Alexander Kabui

2020-11-26	build url for functions	Alexander Kabui

2020-11-26	add css for container	Alexander Kabui

2020-11-26	remove static views form wqflask/view.py	Alexander Kabui

2020-11-26	delete templates/links page	Alexander Kabui

2020-11-26	move css to markdown and add references	Alexander Kabui

2020-11-26	delete reference html page	Alexander Kabui

2020-11-25	Fixed the "Reset Columns" button to work with the new way of showing/hiding ↵	zsloan
	columns (that no longer uses DataTables buttons plug-in)
2020-11-26	modify github button	Alexander Kabui

2020-11-26	modify references links	Alexander Kabui

2020-11-26	register references blueprint	Alexander Kabui

2020-11-26	add reference markdown and github button	Alexander Kabui

2020-11-25	Added actual code for coloring manhattan plot differently to ↵	zsloan
	display_mapping_results.py
2020-11-25	Added code for passing around form parameters related to manhattan plot ↵	zsloan
	coloration to run_mapping.py and views.py
2020-11-25	Added form options for changing manhattan plot color scheme + added ↵	zsloan
	necessary imports and hidden inputs
2020-11-25	Removed an unused console.timeEnd in the JS	zsloan

2020-11-25	Substituted CDN link to the font-awesome CSS with the local guix profile link	zsloan

2020-11-25	Merge pull request #489 from Alexanderlacuna/fix-references	BonfaceKilz
	Fix broken UI
2020-11-24	- Fixed the "Block by Attribute Value" feature	zsloan
	- Changed the "Block by Attribute Value" feature and the "Filter by Value" feature to only work on columns that are numeric or have a small number of distinct values (respectively)
2020-11-24	Added JS for Filter Samples by Value feature and removed a few unused lines	zsloan

2020-11-24	Added html/css for new "Filter Samples by Value" feature and changed a ↵	zsloan
	couple class names to make more sense for being shared between both this feature and "Block Samples by Index"
2020-11-24	solve issues to do with decoding in python3	Alexander Kabui

2020-11-23	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	zsloan

2020-11-23	Changed correlation matrix cells for traits with zero shared samples to ↵	zsloan
	instead say N/A and be a shade of grey
2020-11-21	Merge pull request #488 from ↵	BonfaceKilz
	BonfaceKilz/feature/fetch-md-files-from-gh-docs-repo Feature/fetch md files from gh docs repo
2020-11-21	Use docker image with markdown packaged	BonfaceKilz
	* .github/workflows/main.yml (jobs): [container]: Use image that is on python3-genenetwork "ad741c1" which has python-markdown packaged.
2020-11-20	Replace mockobject with dataclasses	BonfaceKilz
	* wqflask/tests/unit/wqflask/test_markdown_routes.py (MockRequests404): Use dataclasses. (MockRequests200): Ditto.
2020-11-20	Update tests to use new gn2-docs url	BonfaceKilz

2020-11-20	Replace mistunes with markdown library	BonfaceKilz
	* wqflask/wqflask/markdown_routes.py (render_markdown): Use markdown library instead of mistunes.
2020-11-20	Point url for fetching md content to gn-docs repo	BonfaceKilz
	* wqflask/wqflask/markdown_routes.py (render_markdown): Use gn-docs URL to fetch markdown content.
2020-11-20	Remove glossary markdown template	BonfaceKilz
	* wqflask/wqflask/static/markdown/: Delete folder. Files moved to https://github.com/genenetwork/gn-docs
2020-11-19	Removed lines that check that all traits are part of the same group,	zsloan
	since it might be the case in the future that different groups still share sample names (and it's not really necessary since we check how many samples are shraed between each individual pair of traits)
2020-11-18	Fixed issue where the cofactor trait descriptions didn't work correctly	zsloan
	for genotype/snp cofactors (the code previously only accounted for probeset/phenotype cofactors, so it was treating genotypes/snps like phenotype traits)
2020-11-18	Changed default Low/High colors for the correlation scatterplot cofactor	zsloan
	coloring to Blue/Red respectively (was originally Light Grey/Black)
2020-11-18	Added some jquery closing the "Add To Collection" colorbox window after	zsloan
	its form is submitted
2020-11-18	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	zsloan

2020-11-18	Fixed issue that was causing scatterplot cofactors to not work if the	zsloan
	cofactors were genotypes (because it tried to get the "description_display" which doesn't exist for genotype traits)
2020-11-18	Removed console.log and commented out statements from	zsloan
	get_traits_from_collection.js
2020-11-18	Fixed "back_to_collections" function in get_traits_from_collection.js	zsloan
	(function that lets you return from viewing a collection to viewing the list of collections when selecting cofactors for scatterplot)
2020-11-18	Merge pull request #481 from Alexanderlacuna/test-SampleList	BonfaceKilz
	Test sample list
2020-11-18	use f strings in marker_regression/qtlreaper_mapping.py	Alexanderlacuna

2020-11-18	use f strings in marker_regression/plink_mapping	Alexanderlacuna

2020-11-17	use better function names	Alexanderlacuna

2020-11-16	update refactored natural_sort function in show_trait/SampleList.py	Alexanderlacuna

2020-11-13	Switched to using f-strings instead of the older method of string	zsloan
	formatting
2020-11-13	Switched to using boolean casting to check if various trait attributes	zsloan
	exist
2020-11-13	- Added Show/Hide Columns options and included the trait_list.css file	zsloan
	which including styling for said options - Changed some column widths to avoid text wrapping
2020-11-13	Added some css to trait_list.css restyling the "show/hide column"	zsloan
	buttons when they're active. Not really pleased with the result, but styling a button to look depressed is a pain