| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-01-04 | README: Fix typo. | Arun Isaac | |
| * README.md: Change clinians to clinicians. | |||
| 2022-01-04 | bin: Stop execution on error. | Arun Isaac | |
| * bin/genenetwork2: Pass -e flag to sh. | |||
| 2022-01-04 | bin: Set shebang to sh instead of bash. | Arun Isaac | |
| /bin/sh is present on Guix System and other distros while /bin/bash is present only on other distros. * bin/genenetwork2: Set shebang to sh instead of bash. | |||
| 2022-01-04 | bin: Do not set environment variables set by guix shell. | Arun Isaac | |
| The Guix python package accepts GUIX_PYTHONPATH instead of PYTHONPATH. `guix shell' sets GI_TYPELIB_PATH, GIO_EXTRA_MODULES, GUIX_GTK3_PATH, GUIX_PYTHONPATH, PATH, R_LIB_SITE and XDG_DATA_DIRS when necessary. There is no need to set these environment variables explicitly. * bin/genenetwork2: Do not set GI_TYPELIB_PATH, GIO_EXTRA_MODULES, GUIX_GTK3_PATH, PATH, PYTHONPATH, R_LIBS_SITE and XDG_DATA_DIRS. * README.md [Development]: Remove paragraph on injecting python modules locally. | |||
| 2022-01-04 | bin: Set GN2_PROFILE from GUIX_ENVIRONMENT. | Arun Isaac | |
| `guix shell' sets the profile path in an environment variable---GUIX_ENVIRONMENT. There is no need to pass it explicity as an input in GN2_PROFILE. * README.md: Remove all references to GN2_PROFILE. * bin/genenetwork2: Set GN2_PROFILE from GUIX_ENVIRONMENT. Do not check the value of GN2_PROFILE now that it is set automatically. Remove all references to GN2_PROFILE in example invocations. | |||
| 2022-01-03 | Added something that should work as a 'universal' solution for decoding ↵ | zsloan | |
| trait descriptions in search results, since there were still some traits with encoding issues | |||
| 2022-01-03 | Fixed wrong logic for checking for null or empty string trait descriptions ↵ | zsloan | |
| in search results | |||
| 2021-12-23 | If phenotype metadata is cached, authenticate for those traits (otherwise ↵ | zsloan | |
| authentication happens in create_trait at line 105) | |||
| 2021-12-23 | Set new_traits_metadata so caching is used (previously was always an empty dict) | zsloan | |
| 2021-12-20 | This should fix ProbeSet trait descriptions in the search results, which ↵ | zsloan | |
| previousluy weren't showing the proper description | |||
| 2021-12-17 | Some updates to the DOL genotypes conversion script | zsloan | |
| 2021-12-15 | Edited html for index page | zsloan | |
| 2021-12-14 | Removed min-width from container div, since it seems to have preventd ↵ | zsloan | |
| horizontal scrolling when the window is small | |||
| 2021-12-14 | Includes dataset name when creating SimpleNamespace dataset_ob, since it's ↵ | zsloan | |
| needed during authentication | |||
| 2021-12-13 | Fixes issue that caused LRS searches that specify position to not work ↵ | zsloan | |
| properly; the queries had to be changed after integrating the change that also pulls the Max LRS info in the original query | |||
| 2021-12-13 | pep8 formatting | Alexander Kabui | |
| 2021-12-13 | modify endpoint for test wgcna | Alexander Kabui | |
| 2021-12-13 | modify template to show error generated | Alexander Kabui | |
| 2021-12-13 | handle connection error & other exceptions | Alexander Kabui | |
| 2021-12-13 | parse powers to use from form data | Alexander Kabui | |
| 2021-12-13 | add new endpoint:for test gn3 wgcna | Alexander Kabui | |
| 2021-12-07 | Made some changes to the index page HTML | Arthur Centeno | |
| 2021-12-03 | Add mapping_scale to mapping_results.html forum inputs | zsloan | |
| 2021-12-03 | Properly set start position for cM mapping, to prevent overflow + remove ↵ | zsloan | |
| some unnecessary commented out lines | |||
| 2021-12-03 | Make sure mapping_scale is always physic when using GEMMA | zsloan | |
| 2021-12-03 | Prevent points prior to the X axis from being displayed in mapping figure ↵ | zsloan | |
| when zoomed into a sub-range on a chromosome | |||
| 2021-12-02 | Gave the twitter feed div a background color to make it more visually ↵ | zsloan | |
| distinct from surrounding content + removed top margin from ul elements that was added by uikit | |||
| 2021-12-02 | Moved the UIkit CSS from base.html to index_page.html (btw Arthur, never add ↵ | zsloan | |
| CSS files to base.html - it makes their styling apply to every single GN page) | |||
| 2021-12-02 | Removed colons from Links headers and removed margin-bottom for H2 elements | zsloan | |
| 2021-12-02 | Made Affiliates a subcategory of Links | zsloan | |
| 2021-12-02 | Changed index pagee HTML to be more consistent, adding indentation, removed ↵ | zsloan | |
| commented out HTML | |||
| 2021-12-02 | Increased min-width for showtrait-main-div to prevent mapping description ↵ | zsloan | |
| text from overflowing | |||
| 2021-12-02 | Increased mid-width for container element for mapping figure to prevent it ↵ | zsloan | |
| from shrinking when the browser window is smaller (which prevents the links, etc, from overlapping properly with the image) | |||
| 2021-12-01 | Figure out that we are using the wrong db_webqtl_s! | Pjotr Prins | |
| 2021-12-01 | Introduce GN3_PYTHONPATH environment variable | Pjotr Prins | |
| 2021-11-27 | display_files.html: Place "approved" before "rejected" section | BonfaceKilz | |
| 2021-11-25 | wqflask: metadata_edits: Support deletions and insertions from csv | BonfaceKilz | |
| 2021-11-25 | Remove useless comment | BonfaceKilz | |
| 2021-11-25 | Delete noisy logging | BonfaceKilz | |
| 2021-11-24 | Merge pull request #624 from Alexanderlacuna/feature/correlation-optimization2 | BonfaceKilz | |
| Feature/correlation optimization2 | |||
| 2021-11-23 | wqflask: metadata_edits: Sort files from most recent | BonfaceKilz | |
| 2021-11-23 | wqflask: metadata_edits: Remove "\n\n" check with something else | BonfaceKilz | |
| In excel, "\n\n" is replaced with ",,,," and this leads to a value error. | |||
| 2021-11-23 | wqflask: views: Make error messages properly formatted | BonfaceKilz | |
| 2021-11-23 | fix for overwriting file | Alexander Kabui | |
| 2021-11-23 | resolve merge conflicts | Alexander Kabui | |
| 2021-11-23 | pep8 formatting remove dead variables | Alexander Kabui | |
| 2021-11-23 | merge commit :added some logic that takes into account corr_sample_group ↵ | Alexander Kabui | |
| when determining which samples to use when getting sample_data | |||
| 2021-11-19 | Feature/fix wgcna api path (#630) | Alexander Kabui | |
| * add correct path gn3 api endpoint * remove ununsed dependencies;replace libraries with ones from guix * replace xterm cdn libs | |||
| 2021-11-18 | Merge pull request #635 from acenteno/testing | zsloan | |
| Testing | |||
| 2021-11-18 | update base by AC | Arthur Centeno | |
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |