aboutsummaryrefslogtreecommitdiff
AgeCommit message (Collapse)Author
2024-10-09Pass the scope from the token, not applicationFrederick Muriuki Muriithi
There are at times when a token's scope could be attenuated for whatever reason from the full scope allowed to the application. In those instances, it is necessary to use the token's scope rather than the full scope.
2024-10-01Merge pull request #877 from genenetwork/feature/cleanup-base-fileAlexander Kabui
Feature/cleanup base file
2024-09-27Refactor: use url_for to fetch static files.Alexander_Kabui
2024-09-26feat: Modify templates to extend from index_page.Alexander_Kabui
* This ensures we have the global search functionality included for all.
2024-09-26Refactor: Fix order for importing css and js files.Alexander_Kabui
2024-09-26Refactor: Apply linting to gsearch template file.Alexander_Kabui
2024-09-25DEBUG: Log out R/qtl2 or Pair-Scan resultsFrederick Muriuki Muriithi
Running R/qtl2 and Pair-Scan results in the production container fails, but somehow runs on production. This implies a possible configuration thing that is not explicit. Hopefully this debug helps surface the cause to enable fixing.
2024-09-24Fix how name/dataset are passed to hmac_creation in Xapian search resultszsloan
Apparently the .data is necessary, because otherwise it passed some "Just" class that is interpreted as a hash or something. This causes an hmac mismatch when you do things like WebGestalt (and presumably other link-outs as well)
2024-09-24Call the function to get the result.Frederick Muriuki Muriithi
2024-09-24Fix: use logged_in function to check user auth status.Alexander_Kabui
2024-09-24Feat: extend index_page for gsearch_geno and pheno to include globalAlexander_Kabui
search in templates.
2024-09-24Refactor: remove custom css from base file.Alexander_Kabui
2024-09-24Refactor: refactor global search code in index file.Alexander_Kabui
* Include global search via gsearch template.
2024-09-24Refactor: move global search functionality to own module.Alexander_Kabui
2024-09-24Refactor: apply djlint for index page file.Alexander_Kabui
2024-09-24Merge pull request #878 from genenetwork/chores/redirect-after-login-fixesAlexander Kabui
Minor fixes for redirect_url in session
2024-09-23Add method to clear redirect url from session.Alexander_Kabui
2024-09-23Merge pull request #876 from genenetwork/chores/fix-do-ai-searchAlexander Kabui
Fix cases where index for '.' and ',' do not exist for do_ai_search.
2024-09-23Fix: link to the correct url for xapian syntax help.Alexander_Kabui
2024-09-23Refactor: run djlint for base html file.Alexander_Kabui
2024-09-23Refactor: remove empty classes and ids.Alexander_Kabui
2024-09-23Refactor: remove empty classes.Alexander_Kabui
2024-09-23Fix: fix orphan tags.Alexander_Kabui
2024-09-23Fix: use correct classname for dropdown.Alexander_Kabui
2024-09-23Fix: close spans with caret class.Alexander_Kabui
2024-09-23Refactor: run djlint for index page file.Alexander_Kabui
2024-09-23Refactor: move global search js to index file.Alexander_Kabui
2024-09-23Refactor: move global search css to index page.Alexander_Kabui
2024-09-23Refactor: Init move search from base to index file.Alexander_Kabui
2024-09-20Fix cases where index for '.' and ',' do not exist for do_ai_search.Alexander_Kabui
2024-09-20Minor fix: remove unused variable name.Alexander_Kabui
2024-09-20Add request exception handler for gn-docs.Alexander_Kabui
2024-09-20Add error template for gn_docs.Alexander_Kabui
2024-09-19Add a page for searching GeneWiki by symbol.Munyoki Kilyungi
* gn2/wqflask/templates/wiki/search.html: New template. * gn2/wqflask/views.py (search_wiki): New end-point. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-09-19Merge pull request #875 from genenetwork/chores/implement-redirect-for-gn2-authAlexander Kabui
Chores/implement redirect for users
2024-09-18Show the Location for the Description when selecting a cofactor that is a ↵zsloan
genotype marker
2024-09-18Make all code related to Spearman Rank scatterplot conditional on not being ↵zsloan
an Effect Size plot
2024-09-18Increase scatterplot tick lengthzsloan
2024-09-18Refactor: drop __clear_session__ function.Alexander_Kabui
2024-09-18Refactor: try to build endpoint with get request.Alexander_Kabui
If BuildError is raised default to "/"
2024-09-18Update editor preview on mouse click over the editor.Alexander_Kabui
2024-09-18fix minor issue for setting redirect url.Alexander_Kabui
2024-09-18feat(auth): implement redirect to login page and save current endpoint to ↵Alexander_Kabui
session * Redirect users to the login page when authentication is required. * Save the current endpoint in the session for post-login redirection.
2024-09-18After login redirect users to the next request endpoint.Alexander_Kabui
2024-09-18Add new optional parameter to session object: redirect_url.Alexander_Kabui
2024-09-18feat: split header on sentences or commasJohn Nduli
2024-09-18feat: improve animations text in llm search integrationJohn Nduli
2024-09-17Remove 'row' class from the global search summary text, since it was causing ↵zsloan
it to be out of alignment with the rest of the page
2024-09-17Redirect users to login page if they attempt to access a service that ↵Alexander_Kabui
requires authentication but are not logged in
2024-09-17Don't set number/format of ticks for Y-Axiszsloan
Now that there's a flag for whether a plot is an Effect Size plot, there's no need for this