| Age | Commit message (Expand) | Author |
|---|
| 2022-01-27 | Fix issue where Geno query was fetching from the chr_num column instead of th... | zsloan |
| 2022-01-27 | Increase Y of search result table to 1000px so more rows are visible without ... | zsloan |
| 2022-01-27 | This fixes an issue where you couldn't select more than 150-200 rows when sub... | zsloan |
| 2022-01-27 | Fix 'Bad substitution' issue...In posix shell, string indexing is undefined. This commit replaces the
string indexing with a more portable implementation.
| Frederick Muriuki Muriithi |
| 2022-01-26 | update live jupyter notebooks...Removed bonface's notebook until seaborn gets fixed.
| jgart |
| 2022-01-26 | wqflask: Ignore diffs with |ε| < 0.001...* wqflask/wqflask/metadata_edits.py (update_phenotype): Filter out
values with |ε| < 0.001 when generating the diff file.
| BonfaceKilz |
| 2022-01-26 | user_login: Remove noisy debug statement | BonfaceKilz |
| 2022-01-25 | guix.scm: Inherit package from genenetwork2, not genenetwork3....The package definition was likely copied from the genenetwork3 repo
resulting in this error.
* guix.scm: Inherit package from genenetwork2, not genenetwork3.
| Arun Isaac |
| 2022-01-17 | update saunak's live jupyter notebook | jgart |
| 2022-01-17 | update live jupyter notebooks | jgart |
| 2022-01-11 | Removed the deferRender setting, since it appears to revent DataTables API fr... | zsloan |
| 2022-01-06 | README: Document `guix shell' development process....* README.md: Clean up and document `guix shell' development process.
| Arun Isaac |
| 2022-01-06 | guix.scm: Add guix.scm....* guix.scm: New file.
| Arun Isaac |
| 2022-01-06 | README: Fix typo....* README.md: Change clinians to clinicians.
| Arun Isaac |
| 2022-01-06 | bin: Stop execution on error....* bin/genenetwork2: Pass -e flag to sh.
| Arun Isaac |
| 2022-01-06 | bin: Set shebang to sh instead of bash..../bin/sh is present on Guix System and other distros while /bin/bash is
present only on other distros.
* bin/genenetwork2: Set shebang to sh instead of bash.
| Arun Isaac |
| 2022-01-06 | bin: Do not set environment variables set by guix shell....The Guix python package accepts GUIX_PYTHONPATH instead of
PYTHONPATH. `guix shell' sets GI_TYPELIB_PATH, GIO_EXTRA_MODULES,
GUIX_GTK3_PATH, GUIX_PYTHONPATH, PATH, R_LIB_SITE and XDG_DATA_DIRS
when necessary. There is no need to set these environment variables
explicitly.
* bin/genenetwork2: Do not set GI_TYPELIB_PATH, GIO_EXTRA_MODULES,
GUIX_GTK3_PATH, PATH, PYTHONPATH, R_LIBS_SITE and XDG_DATA_DIRS.
* README.md [Development]: Remove paragraph on injecting python
modules locally.
| Arun Isaac |
| 2022-01-06 | bin: Set GN2_PROFILE from GUIX_ENVIRONMENT....`guix shell' sets the profile path in an environment
variable---GUIX_ENVIRONMENT. There is no need to pass it explicity as
an input in GN2_PROFILE.
* README.md: Remove all references to GN2_PROFILE.
* bin/genenetwork2: Set GN2_PROFILE from GUIX_ENVIRONMENT. Do not
check the value of GN2_PROFILE now that it is set
automatically. Remove all references to GN2_PROFILE in example
invocations.
| Arun Isaac |
| 2022-01-05 | metadata_edits.py: Remove duplicate imports | BonfaceKilz |
| 2022-01-05 | Display correct message on the # of edits | BonfaceKilz |
| 2022-01-05 | Insert data to db by checking the tracked deletions, mods, or adds...Prior to this, we only checked for the json files with contained the
modifications. However, in the case of double deletions, and double
inserts, the data would have been stored in the db anyway; which is a
false representation of changes.
| BonfaceKilz |
| 2022-01-05 | Check for any double-inserts or double-deletions...Track any double-inserts or double-deletions
| BonfaceKilz |
| 2022-01-05 | Remove pudb debug statements | BonfaceKilz |
| 2022-01-05 | metadata_edits: Return early if uploaded csv has not been edited | BonfaceKilz |
| 2022-01-05 | display_diffs: Remove in-line styling from "pre" tag | BonfaceKilz |
| 2022-01-05 | Remove pudb line | BonfaceKilz |
| 2022-01-05 | display_diffs: Use datatables for every table | BonfaceKilz |
| 2022-01-05 | Make "Files for approval:" text a "h2" | BonfaceKilz |
| 2022-01-05 | Add interface for displaying diffs in a html page | BonfaceKilz |
| 2022-01-05 | Use datatables to display approved and rejected files | BonfaceKilz |
| 2022-01-03 | Added something that should work as a 'universal' solution for decoding trait... | zsloan |
| 2022-01-03 | Fixed wrong logic for checking for null or empty string trait descriptions in... | zsloan |
| 2021-12-23 | If phenotype metadata is cached, authenticate for those traits (otherwise aut... | zsloan |
| 2021-12-23 | Set new_traits_metadata so caching is used (previously was always an empty dict) | zsloan |
| 2021-12-20 | This should fix ProbeSet trait descriptions in the search results, which prev... | zsloan |
| 2021-12-17 | Some updates to the DOL genotypes conversion script | zsloan |
| 2021-12-15 | Edited html for index page | zsloan |
| 2021-12-14 | Removed min-width from container div, since it seems to have preventd horizon... | zsloan |
| 2021-12-14 | Includes dataset name when creating SimpleNamespace dataset_ob, since it's ne... | zsloan |
| 2021-12-13 | Fixes issue that caused LRS searches that specify position to not work proper... | zsloan |
| 2021-12-13 | pep8 formatting | Alexander Kabui |
| 2021-12-13 | modify endpoint for test wgcna | Alexander Kabui |
| 2021-12-13 | modify template to show error generated | Alexander Kabui |
| 2021-12-13 | handle connection error & other exceptions | Alexander Kabui |
| 2021-12-13 | parse powers to use from form data | Alexander Kabui |
| 2021-12-13 | add new endpoint:for test gn3 wgcna | Alexander Kabui |
| 2021-12-07 | Made some changes to the index page HTML | Arthur Centeno |
| 2021-12-03 | Add mapping_scale to mapping_results.html forum inputs | zsloan |
| 2021-12-03 | Properly set start position for cM mapping, to prevent overflow + remove some... | zsloan |
| 2021-12-03 | Make sure mapping_scale is always physic when using GEMMA | zsloan |
