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2020-07-16Use a non-relative link: "/" instead of "./"BonfaceKilz
Using "./" causes mechanical rob to crash when checking for links
2020-07-16Expose elastic-search variables for tests to passBonfaceKilz
2020-07-16Replace mapping endpoint to "/loading"BonfaceKilz
At one point, "/marker_regression" got replaced, and the html structure changed.
2020-07-16Check for specific text in response and then assert a 200 codeBonfaceKilz
"/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P" is missing in the response code. At one point the html structure changed.
2020-07-16Lower-case http linkBonfaceKilz
2020-07-16Add missing "href" to a linksBonfaceKilz
Without the href, mechanical rob spews some errors
2020-07-14Remove stale commentsBonfaceKilz
2020-07-10Remove deprecated directoryBonfaceKilz
2020-07-08Removed remaining unused references to the old qtlreaperzsloan
2020-07-06Temporarily commented out the line in trait.py doing the encoding until we ↵zsloan
figure out the real solution to that issue
2020-07-06Fixed remaining issue with the logic for making the categories for the Type ↵zsloan
drop-down on the home search page
2020-07-06Fixed issue where the N on the mapping loading page would sometimes be wrong ↵zsloan
when reloading the page or zooming in, etc
2020-07-06Fixed some of the logic with how traits are authenticated to avoid situation ↵zsloan
where a trait is authenticated twice
2020-06-29Fixed remaining issue with the logic for creating the type dropdown option ↵zsloan
groups for the home page search
2020-06-29Loading screen should now show correct N when re-mapping or zooming into a mapzsloan
2020-06-29Change that hopefully fixes some encoding stuffzsloan
2020-06-26Removed collections with zero members from list and count of user collectionszsloan
2020-06-26Changed buttons to inputs on trait page to fix issue with Chrome opening two ↵zsloan
tabs
2020-06-26Fixed issue where option to add members to an existing group was in the ↵zsloan
wrong place
2020-06-26Changed drop-down menus to include type sub-categorieszsloan
2020-06-24Temporary partial fix to issue of resources without info; need to add ↵zsloan
something that automatically inserts resources with default privileges
2020-06-24Fixed issue where scatterplot had different N than correlation results + ↵zsloan
fixed some aesthetic issues with correlatoin results table
2020-06-23Changed back previous 'fix' that was intended to fix issue where two tabs ↵zsloan
were opened when doing mapping/correlations; apparently this is a chrome specific problem so it will need to be deal twiht differently
2020-06-22Fixed issue with temp traits not working for trait page functions like ↵zsloan
correlation or mapping
2020-06-20Missed one issue introduced by last commitzsloan
2020-06-20Fixed ports for proxy (though I need to add the port to global variables) ↵zsloan
and also simplified the check_owner_or_admin function a little
2020-06-20Added some admin functionality and fixed issue with temp traitszsloan
2020-06-17A user's id is now set as a parameter if it doesn't already existauthentication_testzsloan
2020-06-17Fixed issue where removing traits from collection didn't work; previous fix ↵zsloan
wasn't working for some reason
2020-06-17Adding all the authentication stuffzsloan
2020-06-17Fixed issue caused by mapping scale sometimes being wrong + fixed Verify linkzsloan
2020-06-17Fixed issue where removing traits and then running a tool from collection ↵zsloan
page still included the removed traits
2020-06-05Commiting other current group/resource management code, plus the new fileszsloan
2020-06-04Added back in trait info queries for situations where the proxy isn't runningzsloan
2020-06-04Really should have split this into many more commits:zsloan
- Now use proxy to pull trait data and hide traits/results that the user doesn't have view permission for - Created a factory method for creating trait ob so it can return None when user doesn't have view permissions (this is why such a large number of files are changed) - Added metadata to permutation export - Added current group management code - Added fixed password verification e-mail code
2020-05-28Merge branch 'testing' of github.com:zsloan/genenetwork2 into testingzsloan
2020-05-28Added lines calling proxy for publish datasets + added some resource redis ↵zsloan
queries and a missing import for the hmac functions
2020-05-23Changed row highlight color to the more pale yellow it was beforezsloan
2020-05-21More adjusting to table widthszsloan
2020-05-21Made search result table width variable again and fixed row highlighting, ↵zsloan
though later I need to go through and redo a bunch of CSS stuff
2020-05-21Fixed search page table widths by setting max-width, at least for the time beingzsloan
2020-05-20Fixed issue when some case attribute values don't exist + added phenogen ↵zsloan
link to trait page
2020-05-18Added warning that 1 is being added when doing log transform on traits with ↵zsloan
sample values between 0 and 1
2020-05-18Partial fix to issue of the top margin being too small when using R/qtl and ↵zsloan
cofactors
2020-05-18Fixed Bar Chart left margin issue and fixed issue where 0 values didn't have ↵zsloan
+1 added when doing log transforms
2020-05-18Fixed issue with phenotype correlation table and added Plotly Chart Studio ↵zsloan
link to correlation scatterplots
2020-05-13Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-05-13Merge pull request #393 from pjotrp/epysodezsloan
Remove eventlet
2020-05-12Remove eventletepysodePjotr Prins
2020-05-12Merging Danny's changes and Bonface's changes to js importszsloan
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