Age | Commit message (Collapse) | Author | |
---|---|---|---|
2013-09-27 | Added trait links to correlation results | Lei Yan | |
Began adding the code that does the initial sort by literature correlation | |||
2013-09-27 | User registration beginning to work (at least the first stage) | Sam | |
2013-09-27 | Before fixing an issue in pbkdf2 | Sam | |
2013-09-24 | Did some work towards doing the tissue correlation for all traits | root | |
in a dataset (in order to sort by tissue correlation instead of sample correlation). | |||
2013-09-24 | before deleting more of the security flask stuff | Sam | |
2013-09-24 | Just committing a few additions to the interval mapping code | Zachary Sloan | |
2013-09-24 | Fixed the db_tools import in mrna_assay_tissue_data.py | Zachary Sloan | |
Added file for the interval mapping page and wrote code that gets/sets some parameters | |||
2013-09-20 | Tissue correlation results work for sample r/rho correlation page | Lei Yan | |
and are written to the template | |||
2013-09-13 | Merge /home/lei/gene | Zachary Sloan | |
2013-09-13 | Added file that will convert genofiles to plink ped/map files | Zachary Sloan | |
2013-09-13 | Merge https://github.com/zsloan/genenetwork | Lei Yan | |
Resolved conflicts: wqflask/base/trait.py wqflask/wqflask/correlation/correlationFunction.py wqflask/wqflask/correlation/correlation_function.py wqflask/wqflask/correlation/correlation_functions.py wqflask/wqflask/correlation/show_corr_results.py | |||
2013-09-06 | Registration form validaiton without js works | Sam | |
2013-09-05 | Missed some files in last checkin so adding them now | Sam | |
2013-09-05 | Switched registration form to no longer be modal, but instead it's own page | Sam | |
Added validation of form using parsley.js Added password strength indicator using zxcvbn | |||
2013-09-05 | Adjusting to using our own registariton package | Sam | |
2013-09-04 | Trying to trace through files | Sam | |
2013-08-28 | Various changes to track down what happens with security modules | Sam | |
2013-08-23 | Finally figured out where to put flask_security into the code | Sam | |
Various registration template changes | |||
2013-08-23 | Working on user registration and added nginx conf for my branch | Sam | |
2013-08-22 | Added show_trait_js_test to the tests run by test_runner | Zachary Sloan | |
Fixed the part of show_trait_js_test that checks that the style is "display: none;" | |||
2013-08-22 | Fixed a couple minor things | Zachary Sloan | |
2013-08-22 | Fixed import in show_trait_js_test.py | Zachary Sloan | |
Added a function to browser_run.py that gets an element's style | |||
2013-08-21 | Just changed a comment in the show trait js test | Zachary Sloan | |
2013-08-21 | Fixed an issue where correlationFunction was being imported | Zachary Sloan | |
instead of its updated name correlation_function | |||
2013-08-21 | Merge branch 'master' of https://github.com/zsloan/genenetwork | Zachary Sloan | |
2013-08-21 | Just removed a couple print statements | Zachary Sloan | |
2013-08-16 | Created a file (test_runner.py) that runs every test in the | Zachary Sloan | |
directory in a row and reports the results | |||
2013-08-16 | Merge https://github.com/zsloan/genenetwork | Zachary Sloan | |
2013-08-16 | Removed and imported the Test class from browser_test.py in each | Zachary Sloan | |
test file | |||
2013-08-15 | Removed the markers with no variance (and thus no p-values) from the | Zachary Sloan | |
manhattan plot | |||
2013-08-14 | Merge branch 'master' of https://github.com/zsloan/genenetwork | Zachary Sloan | |
2013-08-14 | Made some changes related to getting marker regression working for | Zachary Sloan | |
some datasets | |||
2013-08-14 | Removed some duplicate files in the maintenance folder | Zachary Sloan | |
2013-08-14 | Merge branch 'master' of https://github.com/zsloan/genenetwork | Zachary Sloan | |
2013-08-14 | Committing browser test files | Zachary Sloan | |
2013-08-13 | Added several test files and the file with the class that | Zachary Sloan | |
they import (browser_test.py) | |||
2013-08-08 | First Selenium test added | Sam Ockman | |
2013-08-08 | Fixed issue where points in marker regression manhattan plot | Zachary Sloan | |
weren't positioned on the x-axis | |||
2013-08-07 | Fixed things with the dataset dropdowns and mRNA datasets | Zachary Sloan | |
Improved the templates for a couple pages related to changing user password, etc | |||
2013-08-02 | Fixed a bug related to groups with genofiles (not sure if it makes sense | Zachary Sloan | |
for them not to have genofiles yet) | |||
2013-07-30 | Just added some print statements to debug an issue with LMM code | Zachary Sloan | |
Also added some to notes | |||
2013-07-23 | Fixed a couple issues with he quick_search_table.py script | Zachary Sloan | |
Added notes on using percona to optimise mysql to gn_installation_notes.txt Started moving "get_trait_data" to DataSet since it is the same regardless of the particular DataSet subclass (PhenotypeDataSet, MrnaAssayDataSet, etc) | |||
2013-07-19 | Finished integrating code that reads sample list from geno files | Zachary Sloan | |
withouot using reaper and caches results so it doesn't need to read the file every single time someone loads a page | |||
2013-07-19 | Created file gen_group_samplelists that iterates through all genofiles | Zachary Sloan | |
and builds each groups' samplelist | |||
2013-07-18 | Added Amelie's rat data genotypes | Zachary Sloan | |
Got human mapping mostly working Fixed dataset dropdown menus | |||
2013-07-18 | Merge branch 'master' of https://github.com/zsloan/genenetwork | Zachary Sloan | |
Conflicts: wqflask/base/webqtlConfigLocal.py wqflask/maintenance/gen_select_dataset.py wqflask/wqflask/static/new/javascript/dataset_menu_structure.json | |||
2013-07-18 | Added to installation notes | Zachary Sloan | |
Removed webqtlConfigLocal file containing passwords Updated main page dropdown menus (dataset_menu_structure.json) | |||
2013-07-17 | Fixed gen_select_dataset.py | Zachary Sloan | |
Appended redis installation info to notes | |||
2013-07-16 | Merge branch 'master' of https://github.com/zsloan/genenetwork | Zachary Sloan | |
Conflicts: misc/gn_installation_notes.txt | |||
2013-07-16 | Wrote code that can get a dataset's type for every single GN | Zachary Sloan | |
dataset; previously we could not view traits in datasets that were not in the DBType table in the database |