| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-10-29 | Read connection detail from file. Use contextmanager. | Frederick Muriuki Muriithi | |
| Read connection details from file to make it easier to change host(s) in use. Use contextmanager to manage the connections. | |||
| 2024-10-29 | Use argparse.ArgumentParser to collect CLI args from user | Frederick Muriuki Muriithi | |
| Collect arguments from the CLI using argparse rather than sys.argv directly. | |||
| 2024-10-29 | Change indentation, wrap code in function and create entry-point. | Frederick Muriuki Muriithi | |
| 2024-10-28 | Improve the logic for checking if genotypes are databased | zsloan | |
| Previously it only checked if a genotype 'dataset' existed for the group in question. Now it also checks if the first marker in the results is in the database. This isn't a perfect solution, but it will probably avoid most situations where there's a mismatch between databased markers and markers in the genotype file | |||
| 2024-10-28 | Fix bug that caused scatterplot URLs to be wrong when accessing mapping via hash | zsloan | |
| 2024-10-25 | Change the way the flash_me functions such that there's no margin | zsloan | |
| flash_me handles displaying various notifications and error messages (like when you log out, or when you token expires) | |||
| 2024-10-22 | Add GN2 Fallback link to index page and and error page/text | zsloan | |
| Also removed the error callback from the menu AJAX call since it seems to just duplicate the error message (which is also handled by the statusCode function) | |||
| 2024-10-17 | Fix wildcard search for Genotype searches | zsloan | |
| 2024-10-17 | Remove GeneWeaver link | zsloan | |
| It currently doesn't work and we're not sure what request is needed to get it working again. It seems like GeneWeaver may have replaced their previous functionality with just a REST API, so if we reimplement this we may need to handle the display ourselves (since GeneWeaver may only return results as JSON) | |||
| 2024-10-17 | Replace global search icon with just the text 'Search' | zsloan | |
| Rob had mentioned wanting this change due to confusion over the icon | |||
| 2024-10-15 | Include formatted Bin position in search results as an extra column when ↵ | zsloan | |
| relevant | |||
| 2024-10-15 | Increase phenotype description with on correlation result page table | zsloan | |
| 2024-10-15 | fix: use url_for to get genewiki url | John Nduli | |
| 2024-10-15 | feat: edit shows login message if not loggedin | John Nduli | |
| 2024-10-15 | feat: add gn2 button to link to editting | John Nduli | |
| 2024-10-15 | Merge pull request #880 from genenetwork/chores/implement-clear-field-for-inputs | Alexander Kabui | |
| Implement clear search field for global search. | |||
| 2024-10-14 | Remove empty div. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-14 | Add display page for NCBI RIF metadata. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-09 | Update application's allowed scopes | Frederick Muriuki Muriithi | |
| The `register-client` and `migrate-data` scopes are not supported for end-user clients. | |||
| 2024-10-09 | Pass the scope from the token, not application | Frederick Muriuki Muriithi | |
| There are at times when a token's scope could be attenuated for whatever reason from the full scope allowed to the application. In those instances, it is necessary to use the token's scope rather than the full scope. | |||
| 2024-10-04 | Refactor: add better help message for xapian search hints. | Alexander_Kabui | |
| 2024-10-04 | feat: Implement clear search field for global search. | Alexander_Kabui | |
| 2024-10-01 | Merge pull request #877 from genenetwork/feature/cleanup-base-file | Alexander Kabui | |
| Feature/cleanup base file | |||
| 2024-09-27 | Refactor: use url_for to fetch static files. | Alexander_Kabui | |
| 2024-09-26 | feat: Modify templates to extend from index_page. | Alexander_Kabui | |
| * This ensures we have the global search functionality included for all. | |||
| 2024-09-26 | Refactor: Fix order for importing css and js files. | Alexander_Kabui | |
| 2024-09-26 | Refactor: Apply linting to gsearch template file. | Alexander_Kabui | |
| 2024-09-25 | DEBUG: Log out R/qtl2 or Pair-Scan results | Frederick Muriuki Muriithi | |
| Running R/qtl2 and Pair-Scan results in the production container fails, but somehow runs on production. This implies a possible configuration thing that is not explicit. Hopefully this debug helps surface the cause to enable fixing. | |||
| 2024-09-24 | Fix how name/dataset are passed to hmac_creation in Xapian search results | zsloan | |
| Apparently the .data is necessary, because otherwise it passed some "Just" class that is interpreted as a hash or something. This causes an hmac mismatch when you do things like WebGestalt (and presumably other link-outs as well) | |||
| 2024-09-24 | Call the function to get the result. | Frederick Muriuki Muriithi | |
| 2024-09-24 | Fix: use logged_in function to check user auth status. | Alexander_Kabui | |
| 2024-09-24 | Feat: extend index_page for gsearch_geno and pheno to include global | Alexander_Kabui | |
| search in templates. | |||
| 2024-09-24 | Refactor: remove custom css from base file. | Alexander_Kabui | |
| 2024-09-24 | Refactor: refactor global search code in index file. | Alexander_Kabui | |
| * Include global search via gsearch template. | |||
| 2024-09-24 | Refactor: move global search functionality to own module. | Alexander_Kabui | |
| 2024-09-24 | Refactor: apply djlint for index page file. | Alexander_Kabui | |
| 2024-09-24 | Merge pull request #878 from genenetwork/chores/redirect-after-login-fixes | Alexander Kabui | |
| Minor fixes for redirect_url in session | |||
| 2024-09-23 | Add method to clear redirect url from session. | Alexander_Kabui | |
| 2024-09-23 | Merge pull request #876 from genenetwork/chores/fix-do-ai-search | Alexander Kabui | |
| Fix cases where index for '.' and ',' do not exist for do_ai_search. | |||
| 2024-09-23 | Fix: link to the correct url for xapian syntax help. | Alexander_Kabui | |
| 2024-09-23 | Refactor: run djlint for base html file. | Alexander_Kabui | |
| 2024-09-23 | Refactor: remove empty classes and ids. | Alexander_Kabui | |
| 2024-09-23 | Refactor: remove empty classes. | Alexander_Kabui | |
| 2024-09-23 | Fix: fix orphan tags. | Alexander_Kabui | |
| 2024-09-23 | Fix: use correct classname for dropdown. | Alexander_Kabui | |
| 2024-09-23 | Fix: close spans with caret class. | Alexander_Kabui | |
| 2024-09-23 | Refactor: run djlint for index page file. | Alexander_Kabui | |
| 2024-09-23 | Refactor: move global search js to index file. | Alexander_Kabui | |
| 2024-09-23 | Refactor: move global search css to index page. | Alexander_Kabui | |
| 2024-09-23 | Refactor: Init move search from base to index file. | Alexander_Kabui | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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