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2016-06-16Add default settingsPjotr Prins
2016-06-16default settings: use $HOME as a base by defaultPjotr Prins
2016-06-16Doc: on gn_serverPjotr Prins
2016-06-16Generating the menu is now obsoletePjotr Prins
2016-06-16Menu: removing outdated .coffee file and commentsPjotr Prins
2016-06-16Menu: removed one item from JSONPjotr Prins
2016-06-16Menu: indentationPjotr Prins
2016-06-16Menu: simplifying JSON objectPjotr Prins
2016-06-16Menu: refactoring scoped varsPjotr Prins
2016-06-16Menu: jdata is no longer usedPjotr Prins
2016-06-16Menu: populate datasets dropdownPjotr Prins
2016-06-15Menu: populating tissue from RESTPjotr Prins
2016-06-15Menu: refactoring code, handling errorPjotr Prins
2016-06-14Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2016-06-14Added y axis line to probability plot and bar chartzsloan
Automatically determines number of decimal places to show on y axis of probability plot; still need to figure out how to do it with bar chart Added some logging to figure out MySQL connection issue
2016-06-14Menu: fetch group info from serverPjotr Prins
2016-06-14Make species section in data structurePjotr Prins
2016-06-14Menu: fetch species from gn_serverPjotr Prins
2016-06-14Adding documentationPjotr Prins
2016-06-14Add version filePjotr Prins
2016-06-14Add JOSS citationPjotr Prins
2016-06-14Add JOSS citationPjotr Prins
2016-06-10Docs: the caching server got fixed by http://bugs.gnu.org/21888Pjotr Prins
2016-06-09README: capitalizationPjotr Prins
2016-06-09Doc: moved graph to a lower sectionPjotr Prins
2016-06-09Doc: moved graph into READMEPjotr Prins
2016-06-09Doc: moved graph into READMEPjotr Prins
2016-06-09Doc: moved graph into READMEPjotr Prins
2016-06-09Merge branch 'paper'Pjotr Prins
2016-06-09Docs: add SVG graphPjotr Prins
2016-06-09Merge branch 'paper' of github.com:pjotrp/genenetwork2 into paperPjotr Prins
2016-06-09Docs: expanding on GN2 source install and moved IRC log to the bottomPjotr Prins
2016-06-08Merge pull request #4 from Brainiarc7/patch-4Pjotr Prins
Fix a typo
2016-06-08Fix a typoDennis E. Mungai
Fixed: Before, substituted.
2016-06-08JOSS: added orcid for Nick FurlottePjotr Prins
2016-06-08Docs: updated installation recipePjotr Prins
2016-06-08Docs: updated installation recipePjotr Prins
2016-06-08Docs: updated installation recipePjotr Prins
2016-06-08Docs: added installation recipePjotr Prins
2016-06-07R/qtl pair scan now works again, though it takes a while (10-15 minutes).zsloan
Added pop-up warning user about run-time for pair scan Fixed links to GN2 github on the index page Fixed a couple issues with the search result page text Changed the appearance of the trait sample data table to match other tables (darker headers, etc)
2016-06-03Made a bunch of changes to correlation and search result tables (mainly the ↵zsloan
former) and made all tables a little more compact by lessenning the padding
2016-06-03Changed appearance of tables to more easily differentiate them from the rest ↵zsloan
of the page (still not totally pleased with them though) Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A.
2016-06-02Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2016-06-02Fixed some issues with global search result tables, including:zsloan
- Wrong digits for mean expression and additive effect - Bad loooking width on some columns, like Max LRS Location - Janky functionality for column resizing and drag-and-dropping (just disabled these functions) - Geno and Pheno global search tables weren't built in the same way, so now they are I also fixed the sorting to always put N/A's at the bottom of the table by editing naturalSort.js
2016-06-02Paper: addressing JOSS requirements for contribution, where to findPjotr Prins
documentation and testing materials https://github.com/openjournals/joss-reviews/issues/25
2016-06-02Paper: addressing https://github.com/openjournals/joss-reviews/issues/25Pjotr Prins
last par: "Python" is spelled with a capital 'P'
2016-06-02Paper: addressing https://github.com/openjournals/joss-reviews/issues/25Pjotr Prins
2nd par: "can be found in ___ guix-bioinformatics", please insert 'the article', 'the package', 'the lab fridge labeled'.. whichever is aproppriate ;-)
2016-06-02Paper: addressing https://github.com/openjournals/joss-reviews/issues/25Pjotr Prins
1st par: "experimental data" could be fleshed out in 2-3 words for the biologist reader (is it SNPs, microarray data, NGS, Y2H or manually counted individuals?)
2016-06-01Changed global gene search to no longer use server-side processingzsloan
2016-05-31Fixed error when MrnaAssay search results didn't have a geneidzsloan
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