| Age | Commit message (Expand) | Author |
|---|
| 2023-06-18 | Updating READMEs | Pjotr Prins |
| 2023-06-18 | Remove unused locust file | Pjotr Prins |
| 2023-06-18 | Disable document editing - should move to markdown instead. | Pjotr Prins |
| 2023-06-18 | Cleaning up READMEs - moving stuff to gemtext | Pjotr Prins |
| 2023-06-15 | Add genotype page...* wqflask/wqflask/templates/genotype.html: New template.
* wqflask/wqflask/views.py (get_phenotype): New endpoint.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-14 | Fix broken get_trait_units test | zsloan |
| 2023-06-14 | (Hopefully)fix bug where the mapping form submission is sometimes wrongly tre......as a GET, causing the code to check for a hash_of_inputs input that
doesn't exist.
This is hard to troubleshoot because I could never reproduce the issue
(only Rob has mentioned it), but the error Rob showed me seems to
directly imply this was issue, so hopefully this change (which directly
checks if hash_of_inputs is set) will prevent it
from happening. It's possible it will still throw a different error,
though (if it's actually treating it as a GET, it presumably won't have
any of the other inputs it expects). This issue is a bit confusing,
because I'm not sure how/why mapping run from the trait page would ever
be treated as a GET request (since the show_trait page form is POST).
| zsloan |
| 2023-06-14 | Fix main search bug causing AND searches to no longer work...The cause of this bug is that, when the autocomplete feature was
implemented, it checks the OR search field (in order to save its
contents) and only submits the form if
it isn't empty. This means that, if the user fills out the AND field and
submits the form, nothing happens.
I changed it to check both the AND and OR fields (and save both of their
contents). While not perfect (since only one field is ever actually
used), I figured it's best to just store everything (and there isn't
really any way to know which search is intended when both fields are
filled).
| zsloan |
| 2023-06-14 | Increase number of distinct values for showing the 'Block samples by group' a... | zsloan |
| 2023-06-14 | Remove unused color-by-attribute option + put violin plot div in a section-fo... | zsloan |
| 2023-06-14 | Change mapping descriptions | zsloan |
| 2023-06-14 | Remove unused class | zsloan |
| 2023-06-14 | Make basic stats Plotly figures more consistent | zsloan |
| 2023-06-14 | Change plotly layout options for probability plot | zsloan |
| 2023-06-14 | Change CSS for mapping options/description for better fit | zsloan |
| 2023-06-14 | Make default unit_type value with lower-case v | zsloan |
| 2023-06-14 | Remove extra space | zsloan |
| 2023-06-13 | Deactivate correlation correctness tests temporarily. | Frederick Muriuki Muriithi |
| 2023-06-13 | Namespace session variable....Namespace the session variable name to avoid conflicts with other
systems served on the same domain.
| Frederick Muriuki Muriithi |
| 2023-06-12 | Add phenotype page...* wqflask/wqflask/templates/phenotype.html: New template.
* wqflask/wqflask/views.py (get_phenotype): New endpoint.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-08 | bug: Fix URI to prevent unnecessary redirect. | Frederick Muriuki Muriithi |
| 2023-06-08 | Remove authorization restriction on viewing sample data | zsloan |
| 2023-06-08 | Fix bug by providing anon_id to collections/add | zsloan |
| 2023-06-07 | Add publication page...* wqflask/wqflask/templates/publication.html: New page.
* wqflask/wqflask/views.py (get_dataset): New function.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-06 | Add 1 to LRS_LOD_MAX in order to prevent situations where a tick is missing f... | zsloan |
| 2023-06-06 | Align probability plot title to the left ('xanchor: right' does this for some... | zsloan |
| 2023-06-06 | Make geoSeries a link...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-06 | Put metadata name in a new line...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-06 | Fix geoplatform link in datasets page...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-06 | Fix some titles in INFOPAGE...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-06 | If a title doesn't exist, use the metadata name instead...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-06 | Update dataset page to match GN1...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-02 | Add dataset link that uses RDF...* wqflask/wqflask/templates/dataset.html: New page.
* wqflask/wqflask/templates/show_trait_details.html: Add link to GN2
datasets page.
* wqflask/wqflask/views.py (get_dataset): New endpoint.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-02 | Delete trait metadata from the show_traits page...* wqflask/wqflask/templates/show_metadata_details.html: Delete.
* wqflask/wqflask/templates/show_trait.html: Delete if block that
checks includes trait metadata.
* wqflask/wqflask/views.py: Remove "metadata".
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-05-31 | Use utility.tools to get configuration variables...Using flask.current_app.config for configurations does not give the
appropriate configurations.
| Frederick Muriuki Muriithi |
| 2023-05-31 | Compute dataset type from name. | Frederick Muriuki Muriithi |
| 2023-05-30 | Fix test: Sort values to avoid equality problems. | Frederick Muriuki Muriithi |
| 2023-05-30 | Fix test: Expect tuple not set. | Frederick Muriuki Muriithi |
| 2023-05-30 | Fix test: Expect tuple not set. | Frederick Muriuki Muriithi |
| 2023-05-25 | auth: Show publicly visible traits. | Frederick Muriuki Muriithi |
| 2023-05-25 | Rework UI. Set resource publicly viewable by default....Reorganise the UI for resource creation.
Add a checkbox that sets the resource as publicly viewable by default.
| Frederick Muriuki Muriithi |
| 2023-05-24 | Add link to user-account registration page. | Frederick Muriuki Muriithi |
| 2023-05-23 | oauth2: Enable admins to masquerade as other users | Frederick Muriuki Muriithi |
| 2023-05-22 | Initialize exonStarts and exonEnds for mouse, since it currently throws an er... | zsloan |
| 2023-05-22 | Allow for editing values of samples that don't currently have values...Deletions aren't working yet. This is dependent on a GN3 chance that allows the sample_list to be passed to get_trait_csv_sample_data
| zsloan |
| 2023-05-22 | Fix phenotype metadata template to only read in changed sample data...Also fix the display so it only shows 3 decimal places
| zsloan |
| 2023-05-22 | Add support for editing sample data via an HTML table...This doesn't yet support adding sample data for samples that don't already have values
| zsloan |
| 2023-05-22 | Enable running application under pdb....Add an option to help with running the application under pdb, and add
some documentation to help other developers figure it out.
| Frederick Muriuki Muriithi |
| 2023-05-19 | auth: Integrate metadata editting with new auth | Frederick Muriuki Muriithi |
| 2023-05-19 | auth: Use auth privileges to control UI display...Use the privileges from the authorisation endpoint to control which
elements of the UI are displayed to the user.
* wqflask/base/trait.py: Remove unused import
* wqflask/wqflask/show_trait/show_trait.py: Unhook from GN-PROXY
* wqflask/wqflask/templates/show_trait.html: Display or hide UI
elements depending on the privileges the user has.
* wqflask/wqflask/templates/show_trait_details.html: Display or hide
UI elements depending on the privileges the user has.
* wqflask/wqflask/views.py: Pass privileges, user, and resource
details on to the UI template to be used for controlling UI element
display.
| Frederick Muriuki Muriithi |
