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2024-08-28Fix some issues with handling Xapian search output...- Description trimming is now handled in the python code - HMAC generation function is changed to be the same as the one used by global search - Search terms that currently don't support Xapian searches are now 'routed' to the SQL search zsloan
2024-08-28Set default value for Mean and Additive Effectzsloan
2024-08-28Add default value for location and symbol...Adding these in the DataTables column definitions is convenient because it means they don't need to be dealt with in the Python code zsloan
2024-08-28Create trait objects from Xapian search results to pass to DataTables...This means the result table should be displayed now. The only issue is that this involves a significant amount of duplicated code from gsearch.py; I'm not sure how best to avoid this, but this is okay for now. zsloan
2024-08-28Raise ValueError if dataset type isn't ProbeSet/Publish/Genozsloan
2024-08-28Add doctstrings for new functions in search_results.py...Replace dataset name with fullname (this will need to be changed back when the Xapian indexing is rerun) zsloan
2024-08-28Begin adding Xapian queries for the non-global search and submit request to GN3...Still need to handle the output and address a bug that is also affecting the global search zsloan
2024-08-28Add separate button for Xapian search...This will be temporary in the longer run, but can stay until all functionality is reproduced. zsloan
2024-08-28Make UI items more flexible.Frederick Muriuki Muriithi
2024-08-28Remove flawed "group role" idea: use just "role".Frederick Muriuki Muriithi
2024-08-28Remove deprecated endpoints/views and templatesFrederick Muriuki Muriithi
2024-08-28Fix error display logicFrederick Muriuki Muriithi
2024-08-28Fetch the active user's roles on a particular resource.Frederick Muriuki Muriithi
2024-08-28Use privilege objects rather than IDS.Frederick Muriuki Muriithi
2024-08-28Delete request to obsoleted endpoint.Frederick Muriuki Muriithi
2024-08-28Create a new resource role.Frederick Muriuki Muriithi
2024-08-28Update URI formsFrederick Muriuki Muriithi
2024-08-28Use json for communication with gn-authFrederick Muriuki Muriithi
2024-08-28Provide UI to delete role.Frederick Muriuki Muriithi
2024-08-28List user assigned role of interest.Frederick Muriuki Muriithi
2024-08-28Organise UI into rows: each row holding related data.Frederick Muriuki Muriithi
2024-08-28Unassign privilege from resource role.Frederick Muriuki Muriithi
2024-08-28Import the UUID class directly.Frederick Muriuki Muriithi
2024-08-28Implement "Resource Role Page"...Show the page, providing all UI elements necessary, even if the elements themselves are not active. Frederick Muriuki Muriithi
2024-08-28Generalise `render_ur` for the resources pagesFrederick Muriuki Muriithi
2024-08-28Set default headers for OAuth2Client requests.Frederick Muriuki Muriithi
2024-08-28Simplify 'View-Resource page' UI...Get rid of the resource role details and provide button-like elements to help navigate to view more details. Frederick Muriuki Muriithi
2024-08-28PoC: Display resource roles on View-Resource page.Frederick Muriuki Muriithi
2024-08-28Update UI: Use resource roles rather than obsolete group roles...In a fix to fix a privilege-escalation bug, the `…/group/roles` endpoint was entirely removed and replaced with the less error-prone `…/resource/…/roles` endpoint. This commit updates the code to use the new endpoint's data as appropriate. We also fix typos in some url_for routing arguments. Frederick Muriuki Muriithi
2024-08-28UI: Add placeholder for resource rolesFrederick Muriuki Muriithi
2024-08-28Fix displayed error messageFrederick Muriuki Muriithi
2024-08-28Remove the "Roles" page.Frederick Muriuki Muriithi
2024-08-28Deactivate the "create_role" function...The `create_role` function could lead to privilege escalation. This commit deactivates it completely to prevent the chance of that happening. Frederick Muriuki Muriithi
2024-08-28Bug: Add missing data to search query.Frederick Muriuki Muriithi
2024-08-28Build search URI endpoint on server rather than on JS...To help with maintenance, build the search URI on the server rather than in the javascript. Frederick Muriuki Muriithi
2024-08-28Build phenotype results template URI on backend...Build the template URI on the backend to remove the need to remember to update the javascript if the URI changes in the future. Frederick Muriuki Muriithi
2024-08-28Provide client data used for user verification.Frederick Muriuki Muriithi
2024-08-28Handle generic OAuthError gracefullyFrederick Muriuki Muriithi
2024-08-28Ensure endpoint returns a response.Frederick Muriuki Muriithi
2024-08-28Enable NA sorting for case attributes...The NA-excluding sort functions were moved to table_functions.js (and removed from search_results.js) so they can be used by other pages (in this case the show_trait page) zsloan
2024-08-28Restore collections endpoints...Import was removed in commit 7c77ff91f6530aca0865bd13025811f2f93e3541 because it wasn't being used in views.py, but it was providing the collections endpoints albeit indirectly. This commit makes it somewhat explicit that it is a needed module. zsloan
2024-08-28Bug: Compute numeric timestamp for the claims.Frederick Muriuki Muriithi
2024-08-28Check if case attribute for RRID is a list, to prevent it being added twice i...zsloan
2024-08-28Change default for Mean Expr filter to OR for correlations to avoid excluding...zsloan
2024-08-28Remove styling for search field....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-08-28Check metadata exists before setting 'editable' field in get_dataset....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-08-28Merge pull request #859 from genenetwork/revert-847-feature/gnqa-search-history...Revert "Feature/gnqa search history"Alexander Kabui
2024-08-28Revert "Feature/gnqa search history"Alexander Kabui
2024-08-28Merge pull request #847 from genenetwork/feature/gnqa-search-history...Feature/gnqa search historyAlexander Kabui
2024-05-29Add htmx js api for delete functionality.Alexander_Kabui