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2021-08-03templates: edit_phenotype: Properly centre form controlsBonfaceKilz
2021-08-03templates: edit_phenotype: Use proper page header for this pageBonfaceKilz
2021-08-03templates: edit_phenotype: add some form of padding upload buttonBonfaceKilz
2021-08-03edit_phenotype: Remove duplicate htmlBonfaceKilz
2021-08-03templates: edit_phenotype: Add file upload and "approval" buttonsBonfaceKilz
2021-08-03templates: edit_phenotype: Add enctype to form cause of file uploadsBonfaceKilz
2021-08-03wqflask: views: Return the json data for viewingBonfaceKilz
* wqflask/wqflask/views.py (display_file): New function.
2021-08-03wqflask: views: Approve data when the "approve" button is clickedBonfaceKilz
* wqflask/wqflask/views.py (approve_data): New function.
2021-08-03wqflask: views: Show diff files for the adminBonfaceKilz
* wqflask/wqflask/views.py (display_diffs_admin): New function. * wqflask/wqflask/templates/display_files.html: New template to show the diffs.
2021-08-03wqflask: views: Process file_csv if provided and get the diffBonfaceKilz
* wqflask/wqflask/views.py (update_phenotype): If a file is provided in the request, get the diff and store it in a data escrow.
2021-08-03wqflask: views: Remove un-necessary comment "#" sequenceBonfaceKilz
2021-08-03wqflask: views: Edit end-point to use the phenotype-idBonfaceKilz
squash! wqflask: views: Edit end-point to use the phenotype-id
2021-08-03wqflask: views: Add endpoint for getting the csv dataBonfaceKilz
2021-07-23minor fixes for test_correlation_page table columnsAlexander Kabui
2021-07-23set compute_all for test_compute to TrueAlexander Kabui
2021-07-23handle missing tissue input dataAlexander Kabui
2021-07-13Fixed corr_coeffient to corr_coefficientzsloan
2021-07-12Encode user_id as bytestring if not already bytestring to account for some ↵zsloan
user_ids being stored as different encoding
2021-07-12Merge pull request #590 from Alexanderlacuna/bugfix/rpy2-tissue-broken-linksBonfaceKilz
replace rpy2 for tissue correlation
2021-07-12fix merge conflictAlexander Kabui
2021-07-12tests: test_markdown_routes: Remove stubbed out testsBonfaceKilz
2021-07-12templates: show_trait_details: Show edit buttons conditionallyBonfaceKilz
* wqflask/wqflask/templates/show_trait_details.html: Check the data type, and load different edit buttons.
2021-07-12wqflask: views: Add route for updating the probesetBonfaceKilz
2021-07-12templates: edit_probeset: Add template for editing probeset dataBonfaceKilz
* wqflask/wqflask/templates/edit_probeset.html: New file(template).
2021-07-12wqflask: views: Add extra route showing probeset editing formBonfaceKilz
* wqflask/wqflask/views.py (edit_probeset): New function/ route.
2021-07-12wqflask: views: Rename endpoint for editing a traitBonfaceKilz
* wqflask/wqflask/views.py (edit_trait): Rename to edit_phenotype. Also rename the endpoint to "/trait/<name>/edit/inbredset-id/<inbred_set_id>" to indicate that and inbredset-id is required. This endpoint will be only used for phenotypes. Finally, render the "edit_phenotype.html" template (update_trait): Rename to update_phenotype. Also, remove hard-coded redirect, and replace it with the correct values. * wqflask/wqflask/templates/edit_trait.html: Rename to edit_phenotype.html
2021-07-09Merge pull request #587 from zsloan/feature/use_gn3_for_correlationszsloan
Feature/use gn3 for correlations
2021-07-09Merge branch 'testing' into feature/use_gn3_for_correlationszsloan
2021-07-09Remove commented out function do_bicorzsloan
2021-07-09Only show literature and tissue correlation options if the trait's dataset ↵zsloan
is type ProbeSet
2021-07-09Changed compute_corr_for_top_results to also do sample correlation when ↵zsloan
literature or tissue correlation are selected
2021-07-08Don't do calculates for max column widths if there are no new results; ↵zsloan
previously threw an error
2021-07-08Set a reasonable starting width for genotype search resultszsloan
2021-07-08Improved width of checkbox column for gene global search a bitzsloan
2021-07-08Only use Scroller when there are more than 5 results, since it can cause ↵zsloan
issues if there are only a few rows and the window size is small
2021-07-08Gave initial width to search result table that prevents header misalignment ↵zsloan
issue and improved widths for a couple columns + made checkbox column sortable
2021-07-07Removed width: 100% from the sample-table CSS, since its initial width is ↵zsloan
explicitly set as a function of which columns exist
2021-07-07Set default widths for the common columns for the samplee table + set ↵zsloan
autoWidth to false + fix the logic with how the DataTable is initially loaded
2021-07-07Set beginning width for trait tablezsloan
2021-07-06replace rpy2 for tissue corrAlexander Kabui
2021-07-06fix gn2 linksAlexander Kabui
2021-07-03Increased width of mapping options div and covariates windowzsloan
2021-07-01Merge pull request #589 from zsloan/bug/fix_zoomed_mapping_scalingzsloan
Bug/fix zoomed mapping scaling
2021-07-01Fixed issue with suggestive/significant lines extending beyond figure edge + ↵zsloan
fixed a couple issues with the last commit
2021-07-01Fixed issue where the interval map QTL line might extend beyond the graph ↵zsloan
edge when zoomed into a Mb range + removed some commented out code
2021-07-01Fixed issue where zooming into chromosome 1 was causing the Y axis scaling ↵zsloan
to be bad
2021-07-01Fixed bug where there'd be an error if the max boot count is 0 for a chromosomezsloan
2021-07-01Added imports necessary for resizeable columns and removed unused codezsloan
2021-07-01Removed width from sample_group div and change table div ID to be distinct ↵zsloan
when there are both primary and other samplee tables
2021-07-01Changed initialize_show_trait_tables.js to include resizeable columns and ↵zsloan
deal with both primary/other tables in a single function
generated by cgit v1.2.3 (git 2.46.2) at 2024-12-05 00:34:21 +0000