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2021-08-24README: on installing GN2Pjotr Prins
2021-08-24README: minor editsPjotr Prins
2021-08-24README: install with guix profilePjotr Prins
2021-08-23Merge pull request #599 from zsloan/bug/fix_mapping_recompute_issuezsloan
Bug/fix mapping recompute issue
2021-08-23Removed unused variable from list of 'wanted' variables for mappingzsloan
2021-08-23Fixed issue with the way categorical_vars and perm_strata were being passed ↵zsloan
to the template
2021-08-23Account for situations where the minimum permutation value is also above ↵zsloan
webqtlConfig.MAXLRS; previously threw an error
2021-08-23Fix get_perm_strata to usethe Ids for case attributes instead of names + ↵zsloan
allow perm_strata to be passed to the template
2021-08-23Fix the way categorical_var_list is set to account for case attribute Ids ↵zsloan
being keys now instead of names
2021-08-23Include categorical_vars in mapping_results.html so they're included when ↵zsloan
recomputing
2021-08-23For some reason sample_data was being set twice, and the second time used a ↵zsloan
test function that does not exclude parents/f1s (causing the N to be wrong if parents/f1s exist)
2021-08-20Fixed some logic in trait.py that could cause a problem if a dataset_name ↵zsloan
was passed that wasn't Temp
2021-08-20Fix issue where attempting to get the diff of vals for Temp traits was ↵zsloan
causing an error
2021-08-20startup_config.py: Add DebugToobarExtension for wsgi DEBUG modeBonfaceKilz
* wqflask/utility/startup_config.py (app_config): Add DebugToolbarExtension
2021-08-19Change color for Submit button when selecting covariates + move Back button ↵zsloan
to the far right
2021-08-19Fixed R/qtl 'select covariates' buttons to be the same as the changed ones ↵zsloan
for GEMMA
2021-08-19Fixed issue in JS that caused filter_by_value to not work for case attributeszsloan
2021-08-19Fixed the way the drop-down for Filter by Value set values for the case ↵zsloan
attributes
2021-08-19Added type='button' to the mapping compute buttons in order to prevent them ↵zsloan
from being submitted twice
2021-08-19Add hash of vals and diff of vals to template_vars passed to loading page in ↵zsloan
views.py
2021-08-19Fix issues caused by the attribute keys being ids instead of names + fix ↵zsloan
issue caused by an attribute cell being empty
2021-08-19Exclude attributes with only one distinct value as wellzsloan
2021-08-19Removed some unnecessary empty lines from loading.html JSzsloan
2021-08-19Added function for getting the diff of sample values before and after user ↵zsloan
changes to show_trait.py
2021-08-19Added hash of sample values and table of changed values to the loading pagezsloan
2021-08-19Added option to make collection default in the colorbox pop-upzsloan
2021-08-19Shorten 'Add to existing collection' button to 'Add'zsloan
2021-08-19Removed ID of 'submit' from the button in the cofactor select table, since ↵zsloan
it was causing trait page forms to not submit after opening it
2021-08-19After removing all cofactors, return the size of the select element to 2zsloan
2021-08-19Changed Remove All button to Clear and changed Select and Clear button colorszsloan
2021-08-19Add some CSS changing the way the colorbox pop-up for adding covariates ↵zsloan
looks on the trait page
2021-08-19Add Removal All button that removes all currently added covariateszsloan
2021-08-19Update show_trait.js to make removing covariates work with the new select ↵zsloan
element; individual covariates can now be removed
2021-08-19Update get_covariates_from_collection.js to properly interact with the ↵zsloan
select element instead of the previous textarea
2021-08-19Replace textarea with multiple select element for displaying mapping covariateszsloan
2021-08-18Revert "wqflask: wsgi: Remove it"BonfaceKilz
This reverts commit 83af88a4bbf9d8a67f4d11c3546ba64f09efb6d2.
2021-08-17Merge pull request #598 from zsloan/feature/add_filter_by_study_sampleszsloan
Feature/add filter by study samples
2021-08-17wqflask:.DS_Store: Delete itBonfaceKilz
2021-08-17wqflask: runserver: Add DebugToolbar when running in DEBUG modeBonfaceKilz
2021-08-17wqflask: views: Re-enable admin access in edit probesetBonfaceKilz
2021-08-17wqflask: wsgi: Remove itBonfaceKilz
* wqflask/wsgi.py: Delete file. Not used anywhere.
2021-08-16Update URL for editing published traitBonfaceKilz
2021-08-16wqflask: views: Use "inbredset_id" in the "Edit Trait" URLBonfaceKilz
2021-08-16wqflask: views: Remove commented out code blocksBonfaceKilz
2021-08-16Add "Description" column to CaseAttributeBonfaceKilz
See: eecaad2d
2021-08-13base: data_set: Remove unnecessary comments and logging statementsBonfaceKilz
2021-08-13wqflask: show_trait:: Remove debug commentBonfaceKilz
2021-08-12Account for user selecting one of the two sample groups if more than one existzsloan
2021-08-12Fixed issue where 1 was added to the loop.index instead of subtracted + only ↵zsloan
show the sample group selection if there are more than one sample groups
2021-08-12Add JS for filtering sample table rows by study samplelistzsloan
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