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2023-12-29Namespace all modules under gn2....We move all modules under a gn2 directory. This is important for "correct" packaging and deployment as a Guix service. Arun Isaac
2023-12-29use gn-serverl-url for gn3 apiAlexander_Kabui
2023-12-23use gn3 local urlAlexander_Kabui
2023-12-22Merge pull request #823 from genenetwork/feature/gn-llm-ui...Feature/gn llm UIAlexander Kabui
2023-12-22guix: Do not fix version of package.Arun Isaac
2023-12-22guix: Clear up imports.Arun Isaac
2023-12-21Add option to invert X and Y axes for scatterplotzsloan
2023-12-21ui code refactoringAlexander_Kabui
2023-12-20Add missing programmers + margins to credits pagezsloan
2023-12-20Add option to Show More/Less for trait page descriptions when the description...zsloan
2023-12-20code refactoringAlexander_Kabui
2023-12-20code formatting fixesAlexander_Kabui
2023-12-20init gnqna ui implementationAlexander_Kabui
2023-12-20add template handler for gngnaAlexander_Kabui
2023-12-20add gnqna search form for home pageAlexander_Kabui
2023-12-18Display empty collections...The count in the badge includes collections that are empty. This commit fixes the UI to display empty collections too. Frederick Muriuki Muriithi
2023-12-18Fix typo.Frederick Muriuki Muriithi
2023-12-15Increase width of Location selection for correlationszsloan
2023-12-15Make correlation and mapping CSS for trait page the samezsloan
2023-12-15Set min-width for show_trait page container div to prevent buttons from looki...zsloan
2023-12-15Update to more correct Xapian Search Queries linkzsloan
2023-12-13Update Global Search help linkzsloan
2023-12-07Move asterisk in mapping options to prevent overlapping with the Copy and Sha...zsloan
2023-12-07Fix bug when viewing individual chromosomes for non-mouse/rat specieszsloan
2023-12-07Make the font-size for block-quotes smaller compared to the default....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-12-07Fix typo....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-12-07Add link to GN1 for quick comparison....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-12-07Update how the title is constructed....* wqflask/wqflask/templates/metadata/dataset.html: In order of priority, display: title, label, altLabel. Otherwise, you can possibly have the GN Accession Id forming the title of this page. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-12-07Update datasets page with updated RDF json-ld result....* wqflask/wqflask/templates/metadata/dataset.html: Minor updates. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-12-05Send the GN3 API server URI as configured for GN2Frederick Muriuki Muriithi
2023-12-05Update URIs to the new GN-AUTH uris...The javascript was still using the GN3 URIs from when auth was done in GN3. This commit updates the code to the new URI paths. Frederick Muriuki Muriithi
2023-12-05Remove user-roles fetching statement...Remove the code fetching all the user roles, since they are not used. Frederick Muriuki Muriithi
2023-11-30Remove duplicate month field in Phenotypes page....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-30Fix dataset page links in Phenotypes UI page....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-30Handle display for unpublished data...Example: http://cd.genenetwork.org/phenotypes/BXD_17019 Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-30Add "Peak Location" in phenotypes display....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-30Refine display of publication details in phenotype template....* wqflask/wqflask/templates/phenotype.html: Use "metadata.references" to fetch publication details. Replace LRS value with LOD Score ("Peak -logP"). Rename "Additive" -> "Effect Size." Replace "Title" with "Publication." Use "ANSI/NISO Z39.29-2005(R2010)" format for displaying publications details. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-30Use correct field to fetch the additive value....* wqflask/wqflask/templates/phenotype.html: Use the correct field to fetch the additive value. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-30Remove text-underline for phenotype page-header....* wqflask/wqflask/templates/phenotype.html: Remove underline. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-30Update phenotype retrieval route, incorporate group parameter....* wqflask/wqflask/views.py (get_phenotype): Add "group" parameter. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-29Remove set operator when fetching correlation metadata...I'm not sure why this was introduced in the first place, but it appears to cause an issue where a semicolon is displayed in the description even when there's no probe target description (and removing it doesn't seem to cause any problems) zsloan
2023-11-27Change info file links + make them open in new tabszsloan
2023-11-27Rename metadata/genotype -> metadata/genotypes....* wqflask/wqflask/views.py (get_genotype): Rename genotype -> genotypes. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-27Update genotype UI page....* wqflask/wqflask/templates/genotype.html: Update page. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-27Update the phenotype page....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-27Rename "/phenotype" -> "phenotypes" endpoint....* wqflask/wqflask/views.py (get_phenotype): Rename "/phenotype" -> "phenotypes". Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-27Revamp UI page for publications....* wqflask/wqflask/templates/publication.html: Update UI. When a particular metadata item does not show up, show "N/A" instead. * wqflask/wqflask/views.py (get_publication): Rename "publication"->"publications". Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-27Remove javascript integrity check for HTMX....Firefox will always give the following error: None of the “sha384” hashes in the integrity attribute match the content of the subresource. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-27Point htmx to the correct endpoint for dataset search....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-27Use correct src for htmx....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
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