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2013-10-16Added interval_mapping to views.pyZachary Sloan
Made some more changes to interval_mapping.py
2013-10-16security code cleanupSam
2013-10-15Merge /home/zas1024/geneSam
2013-10-15Password reset now works...but needs some error checking stillSam
2013-10-15Before getting rid of query_string in DecodeUserSam
2013-10-15Changed templates to call the header macroZachary Sloan
Correlation page now works with Non-BXD (or whatever group) or All Samples options
2013-10-15* Redid mail sending service to set a ping showing it's aliveSam
* Redid server so it wouldn't start unless mail service recently pinged * Wrote a bunch of forgot password code * Refactored sending email about verification and forgotten passwords
2013-10-11Merge /home/sam/geneLei Yan
2013-10-11Merge /home/sam/geneZachary Sloan
2013-10-11Small changes around logging inSam
2013-10-11Merge /home/lei/geneZachary Sloan
Conflicts: wqflask/maintenance/quick_search_table.py
2013-10-10Almost have correlation working for non-primary strain/groupLei Yan
There's just some issue with parents/f1s not being included if you select non-BXD (or whatever the group is). All Samples, however does work.
2013-10-09Improved some of the code related to the correlation pageLei Yan
For example, changed the two functions getting gene symbols and ids for a dataset into one function that can take a column name as a parameter
2013-10-08Literature correlation works when it is selected as the sortedLei Yan
correlation type (that is, when it is run again all traits in a database) Added a function to data_set.py that gets all the gene_ids in the data set. Not sure if having a separate function for getting the gene_ids and another for getting the gene symbols makes sense.
2013-10-08Did some work with interval mapping page; will use qtl reaper to doZachary Sloan
the mapping, since it is reliable/fast and avoids us having to rewrite from scratch using something like r/qtl
2013-10-07Worked on logins, session_ids, flash messages, etc.Sam
2013-10-06Before writing login codeSam
2013-10-03Much more progess on logging in:Sam
* Verifying emails now works * Redid user manager
2013-10-02Half the verification code for email addresses is doneSam
2013-09-27Downloaded the TableTools library so tables can be exported/savedLei Yan
2013-09-27Added trait links to correlation resultsLei Yan
Began adding the code that does the initial sort by literature correlation
2013-09-27User registration beginning to work (at least the first stage)Sam
2013-09-27Before fixing an issue in pbkdf2Sam
2013-09-24Did some work towards doing the tissue correlation for all traitsroot
in a dataset (in order to sort by tissue correlation instead of sample correlation).
2013-09-24before deleting more of the security flask stuffSam
2013-09-24Just committing a few additions to the interval mapping codeZachary Sloan
2013-09-24Fixed the db_tools import in mrna_assay_tissue_data.pyZachary Sloan
Added file for the interval mapping page and wrote code that gets/sets some parameters
2013-09-20Tissue correlation results work for sample r/rho correlation pageLei Yan
and are written to the template
2013-09-13Merge /home/lei/geneZachary Sloan
2013-09-13Added file that will convert genofiles to plink ped/map filesZachary Sloan
2013-09-13Merge https://github.com/zsloan/genenetworkLei Yan
Resolved conflicts: wqflask/base/trait.py wqflask/wqflask/correlation/correlationFunction.py wqflask/wqflask/correlation/correlation_function.py wqflask/wqflask/correlation/correlation_functions.py wqflask/wqflask/correlation/show_corr_results.py
2013-09-06Registration form validaiton without js worksSam
2013-09-05Missed some files in last checkin so adding them nowSam
2013-09-05Switched registration form to no longer be modal, but instead it's own pageSam
Added validation of form using parsley.js Added password strength indicator using zxcvbn
2013-09-05Adjusting to using our own registariton packageSam
2013-09-04Trying to trace through filesSam
2013-08-28Various changes to track down what happens with security modulesSam
2013-08-23Finally figured out where to put flask_security into the codeSam
Various registration template changes
2013-08-23Working on user registration and added nginx conf for my branchSam
2013-08-22Added show_trait_js_test to the tests run by test_runnerZachary Sloan
Fixed the part of show_trait_js_test that checks that the style is "display: none;"
2013-08-22Fixed a couple minor thingsZachary Sloan
2013-08-22Fixed import in show_trait_js_test.pyZachary Sloan
Added a function to browser_run.py that gets an element's style
2013-08-21Just changed a comment in the show trait js testZachary Sloan
2013-08-21Fixed an issue where correlationFunction was being importedZachary Sloan
instead of its updated name correlation_function
2013-08-21Merge branch 'master' of https://github.com/zsloan/genenetworkZachary Sloan
2013-08-21Just removed a couple print statementsZachary Sloan
2013-08-16Created a file (test_runner.py) that runs every test in theZachary Sloan
directory in a row and reports the results
2013-08-16Merge https://github.com/zsloan/genenetworkZachary Sloan
2013-08-16Removed and imported the Test class from browser_test.py in eachZachary Sloan
test file
2013-08-15Removed the markers with no variance (and thus no p-values) from theZachary Sloan
manhattan plot
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