| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-06-23 | Change jsonable in GeneralTrait so that it passes all necessary table | zsloan | |
| information | |||
| 2022-06-23 | Convert trait.view to string for conversion to JSON | zsloan | |
| It's originally a boolean, which causes an error when passed to the JS code as JSON | |||
| 2022-06-23 | Change create_datatable.js from CRLF to LF + fix a couple syntax bugs | zsloan | |
| 2022-06-23 | Pass table data to collections/view template and create_table.js | zsloan | |
| 2022-06-21 | wqflask: views: Delete noisy logging and dead code | BonfaceKilz | |
| - Remove commented out code-blocks - Remove calls with this pattern: logger.info("Sending ...") logger.info(request.url) Should you want to inspect the local context of an environment when troubleshooting, set a breakpoint() and inspect the environment. To view everything in the local context, use "pp locals()"; and to view everything in the global context, use "pp globals()". | |||
| 2022-06-20 | Simplify partial correlation method choices | Frederick Muriuki Muriithi | |
| - Have only `Pearson's r` and `Spearman's rho` as the available choices for the partial correlations. | |||
| 2022-06-16 | Change table_functions.js variables to camelCase | zsloan | |
| 2022-06-16 | Replace DataTables code in collection view page with call to new create_table.js | zsloan | |
| 2022-06-16 | Initial commit for create_datatable.js | zsloan | |
| This file will contain the generic function for initializing datatables, that will take the table ID, table data, column definitions, and custom settings as input (custom settings being additional DataTables settings or settings differing from the defaults) | |||
| 2022-06-16 | Include json version of collection trait list, so it can be passed directly ↵ | zsloan | |
| to DataTables | |||
| 2022-06-15 | templates: base: Update GN2 footer | BonfaceKilz | |
| * wqflask/wqflask/templates/base: Remove links to non-functioning mailing list. Remove link to "#genenetwork" channel that isn't currently owned/moderated. Co-authored-by: Ethan Willis <elwillis1@gmail.com> | |||
| 2022-06-13 | Check chromosome for 'Un' in search results and print N/A in such cases | zsloan | |
| 2022-06-13 | Check for chromosome of 'Un' and print location as 'Not available' in such cases | zsloan | |
| 2022-06-13 | Increase width threshold for using scroller, to prevent issue with blue ↵ | zsloan | |
| lines at bottom of table | |||
| 2022-06-13 | Limit search result descriptions to 500 characters | zsloan | |
| 2022-06-13 | Add |safe to ensure HTML entites are correctly escaped for trait descriptions | zsloan | |
| 2022-06-10 | Skip failing integration test | BonfaceKilz | |
| ATM, it's hard to by-pass the authentication decorators, and as such, skip this test for. This may be deleted later. | |||
| 2022-06-10 | Reverse polarity for gemma additive effects in tests | BonfaceKilz | |
| Fixes broken test. See: #89a7868. | |||
| 2022-06-07 | Define gn_server_url before running the drop-down menu JS code | zsloan | |
| 2022-06-07 | Make indentation and spacing more consistent for | zsloan | |
| dataset_select_menu_orig.js | |||
| 2022-06-07 | Fix issue that caused Submit Trait page drop-down menus to not work | zsloan | |
| Also removes a bunch of unnecessary console logging | |||
| 2022-06-03 | Give speciesid single quotes like the other config_dic keys, just for ↵ | zsloan | |
| consistency | |||
| 2022-06-03 | Allow GenoFreezeId to be passed in configurations to load_genotypes.py | zsloan | |
| 2022-06-01 | Fix the way R/qtl is called in the GN2 REST API | zsloan | |
| 2022-06-01 | Remove IDs called 'submit' to prevent forms from breaking | zsloan | |
| Apparently if a button has an ID called 'submit', trying to submit a form via JS won't work | |||
| 2022-05-31 | Check if entered pubmed_id is already associated with a publication, and | zsloan | |
| set PublishXRef.PublicationId equal to that Id if it exists | |||
| 2022-05-31 | Reverse polarity for gemma additive effects | zsloan | |
| This is basically just a quick pseudo-fix to at least get the polarity right | |||
| 2022-05-31 | Fix minor bug | Frederick Muriuki Muriithi | |
| 2022-05-31 | Fix error rendering | Frederick Muriuki Muriithi | |
| Render the command_id if present in the error report to help with troubleshooting failures. | |||
| 2022-05-27 | Apply python-black on file | BonfaceKilz | |
| 2022-05-27 | Don't make a POST if there's a blank form-element | BonfaceKilz | |
| 2022-05-27 | Move SQL queries to GN3 | BonfaceKilz | |
| 2022-05-27 | Strip data before storing it | BonfaceKilz | |
| 2022-05-27 | Make sure the user is logged in when approving data | BonfaceKilz | |
| 2022-05-27 | Pass secend arg to cursor.execute as a tuple | BonfaceKilz | |
| 2022-05-27 | Add sensible styling to "reject"/"approve" buttons | BonfaceKilz | |
| 2022-05-27 | Align "Add New" button with the actions column | BonfaceKilz | |
| 2022-05-27 | Add js logic to POST to "approval" endpoint | BonfaceKilz | |
| 2022-05-27 | Assign the correct value to key | BonfaceKilz | |
| 2022-05-27 | Display description diff-data if it exists | BonfaceKilz | |
| 2022-05-27 | Ony show the title if there are any changes to be approved/rejected | BonfaceKilz | |
| 2022-05-27 | Cosmetic changes in Jinja template | BonfaceKilz | |
| 2022-05-27 | Add new endpoint for "approving" case-attributes modifications | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py (approve_case_attribute_data): New end-point. | |||
| 2022-05-27 | Remove dead comment | BonfaceKilz | |
| 2022-05-27 | Append to "modifications" if "description"/"name" exist | BonfaceKilz | |
| 2022-05-27 | Make sure is in editor's group to view the case-attributes | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py (show_case_attribute_columns): Add "case_attributes_edit_access" and "login_required" decorators. | |||
| 2022-05-27 | Make sure user is part of "editors" group to make (case attrs) edits | BonfaceKilz | |
| * wqflask/wqflask/decorators.py: Import "gn3.authentication.get_groups_by_user_uid". (case_attributes_edit_access): New decorator. Checks which users are in the "editors" group in Redis. * wqflask/wqflask/metadata_edits.py: Import "wqflask.decorators.case_attributes_edit_access" (update_case_attributes): Use "@update_case_attributes" decorator. (reject_case_attribute_data): Ditto. | |||
| 2022-05-27 | Replace "_get_author" with "gn3.authentication.get_user_info_by_key" | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py (_get_author): Delete function. (show_case_attribute_columns): Use "get_user_info_by_key". | |||
| 2022-05-27 | Implement "reject"---for case-attr---endpoint | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py (show_case_attribute_columns): Fetch id---this is already passed in the template---when getting case attributes. (reject_case_attribute_data): New endpoint for rejecting data. * wqflask/wqflask/templates/case_attributes.html: Add JS logic for rejecting data. | |||
| 2022-05-27 | Move the case-attribute id to the button where the event occurs | BonfaceKilz | |
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