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2015-03-17Merge branch 'master' of github.com:pjotrp/genenetwork2 into pjotr_testzsloan
2015-03-17Added permutations and cleaned code for rqtlzsloan
2015-03-17Merge branch 'master' of https://github.com/zsloan/genenetwork2 into pylmm0001Pjotr Prins
2015-03-17Converting an absolute path to a relative pathDannyArends
2015-03-17Added files for bootstrap icons and scatter-plot css fileZachary Sloan
2015-03-17Improved rqtl codeZachary Sloan
2015-03-17Moved scatter-plot to the right of options instead of belowZachary Sloan
2015-03-17Moved setting of geno variable into non-humanZachary Sloan
2015-03-17Release 0.50-gn2-pre1Pjotr Prins
2015-03-17GWAS: sort results so we always get the same listPjotr Prins
2015-03-17README: Started release information and versioning of modulePjotr Prins
2015-03-17runlmm: Explicit handling of missing phenotypesPjotr Prins
2015-03-17GWAS: should be correct nowPjotr Prins
2015-03-17GWAS: one result is missingPjotr Prins
2015-03-17lmm1: fixed a few regressions introduced while debuggingPjotr Prins
2015-03-17lmm.py: bring to original statePjotr Prins
2015-03-17GWAS multi-core: Tweak queuePjotr Prins
2015-03-16GWAS: results get returnedPjotr Prins
2015-03-16Adding GWAS codePjotr Prins
2015-03-16Adding multi-core GWASPjotr Prins
2015-03-16Output addedPjotr Prins
2015-03-16Refactoring eigenvalue KvaKvePjotr Prins
2015-03-15CommentPjotr Prins
2015-03-15A little cleanupPjotr Prins
2015-03-15Added multi-core kinship supportPjotr Prins
2015-03-14Threading: Sleep while waitingPjotr Prins
2015-03-14Allow the GC to do its jobPjotr Prins
2015-03-14Allow queue to be 2xCPU. Disable output filesPjotr Prins
2015-03-14Kinship multi-core: don't overload the queue with jobsPjotr Prins
2015-03-14Parallel K calculation is fixedPjotr Prins
2015-03-14Tests and indentationPjotr Prins
2015-03-14Conditional run of K calculationPjotr Prins
2015-03-14Adding testsPjotr Prins
2015-03-14Adding assertionsPjotr Prins
2015-03-14Allow empty K to be passed inPjotr Prins
2015-03-14Removing all references to is_testingPjotr Prins
2015-03-14Working on kinship: GN2 and simple matrix multiplicatino agreePjotr Prins
2015-03-14More MAFPjotr Prins
2015-03-14Replace missing values with MAFPjotr Prins
2015-03-14Testing kinship works on small GPjotr Prins
2015-03-14Merge branch 'zsloan' into devPjotr Prins
2015-03-14kinship: working on pylmmPjotr Prins
2015-03-13runlmm.py: remove extraneous conversionPjotr Prins
2015-03-13& RefactoringPjotr Prins
2015-03-13& runlmm.py: added assertions for default runPjotr Prins
2015-03-12lmm: use deep-copy to avoid side-effectsPjotr Prins
2015-03-12weird fix for lmm result - Python weirdnessPjotr Prins
2015-03-12Check GPjotr Prins
2015-03-12Debug infoPjotr Prins
2015-03-12process_plink.py: remove unused filePjotr Prins
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