| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2020-11-25 | Added actual code for coloring manhattan plot differently to ↵ | zsloan | |
| display_mapping_results.py | |||
| 2020-11-25 | Added code for passing around form parameters related to manhattan plot ↵ | zsloan | |
| coloration to run_mapping.py and views.py | |||
| 2020-11-25 | Added form options for changing manhattan plot color scheme + added ↵ | zsloan | |
| necessary imports and hidden inputs | |||
| 2020-11-25 | Removed an unused console.timeEnd in the JS | zsloan | |
| 2020-11-25 | Substituted CDN link to the font-awesome CSS with the local guix profile link | zsloan | |
| 2020-11-25 | Merge pull request #489 from Alexanderlacuna/fix-references | BonfaceKilz | |
| Fix broken UI | |||
| 2020-11-24 | - Fixed the "Block by Attribute Value" feature | zsloan | |
| - Changed the "Block by Attribute Value" feature and the "Filter by Value" feature to only work on columns that are numeric or have a small number of distinct values (respectively) | |||
| 2020-11-24 | Added JS for Filter Samples by Value feature and removed a few unused lines | zsloan | |
| 2020-11-24 | Added html/css for new "Filter Samples by Value" feature and changed a ↵ | zsloan | |
| couple class names to make more sense for being shared between both this feature and "Block Samples by Index" | |||
| 2020-11-24 | solve issues to do with decoding in python3 | Alexander Kabui | |
| 2020-11-23 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2020-11-23 | Changed correlation matrix cells for traits with zero shared samples to ↵ | zsloan | |
| instead say N/A and be a shade of grey | |||
| 2020-11-21 | Merge pull request #488 from ↵ | BonfaceKilz | |
| BonfaceKilz/feature/fetch-md-files-from-gh-docs-repo Feature/fetch md files from gh docs repo | |||
| 2020-11-21 | Use docker image with markdown packaged | BonfaceKilz | |
| * .github/workflows/main.yml (jobs): [container]: Use image that is on python3-genenetwork "ad741c1" which has python-markdown packaged. | |||
| 2020-11-20 | Replace mockobject with dataclasses | BonfaceKilz | |
| * wqflask/tests/unit/wqflask/test_markdown_routes.py (MockRequests404): Use dataclasses. (MockRequests200): Ditto. | |||
| 2020-11-20 | Update tests to use new gn2-docs url | BonfaceKilz | |
| 2020-11-20 | Replace mistunes with markdown library | BonfaceKilz | |
| * wqflask/wqflask/markdown_routes.py (render_markdown): Use markdown library instead of mistunes. | |||
| 2020-11-20 | Point url for fetching md content to gn-docs repo | BonfaceKilz | |
| * wqflask/wqflask/markdown_routes.py (render_markdown): Use gn-docs URL to fetch markdown content. | |||
| 2020-11-20 | Remove glossary markdown template | BonfaceKilz | |
| * wqflask/wqflask/static/markdown/: Delete folder. Files moved to https://github.com/genenetwork/gn-docs | |||
| 2020-11-19 | Removed lines that check that all traits are part of the same group, | zsloan | |
| since it might be the case in the future that different groups still share sample names (and it's not really necessary since we check how many samples are shraed between each individual pair of traits) | |||
| 2020-11-18 | Fixed issue where the cofactor trait descriptions didn't work correctly | zsloan | |
| for genotype/snp cofactors (the code previously only accounted for probeset/phenotype cofactors, so it was treating genotypes/snps like phenotype traits) | |||
| 2020-11-18 | Changed default Low/High colors for the correlation scatterplot cofactor | zsloan | |
| coloring to Blue/Red respectively (was originally Light Grey/Black) | |||
| 2020-11-18 | Added some jquery closing the "Add To Collection" colorbox window after | zsloan | |
| its form is submitted | |||
| 2020-11-18 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2020-11-18 | Fixed issue that was causing scatterplot cofactors to not work if the | zsloan | |
| cofactors were genotypes (because it tried to get the "description_display" which doesn't exist for genotype traits) | |||
| 2020-11-18 | Removed console.log and commented out statements from | zsloan | |
| get_traits_from_collection.js | |||
| 2020-11-18 | Fixed "back_to_collections" function in get_traits_from_collection.js | zsloan | |
| (function that lets you return from viewing a collection to viewing the list of collections when selecting cofactors for scatterplot) | |||
| 2020-11-18 | Merge pull request #481 from Alexanderlacuna/test-SampleList | BonfaceKilz | |
| Test sample list | |||
| 2020-11-18 | use f strings in marker_regression/qtlreaper_mapping.py | Alexanderlacuna | |
| 2020-11-18 | use f strings in marker_regression/plink_mapping | Alexanderlacuna | |
| 2020-11-17 | use better function names | Alexanderlacuna | |
| 2020-11-16 | update refactored natural_sort function in show_trait/SampleList.py | Alexanderlacuna | |
| 2020-11-13 | Switched to using f-strings instead of the older method of string | zsloan | |
| formatting | |||
| 2020-11-13 | Switched to using boolean casting to check if various trait attributes | zsloan | |
| exist | |||
| 2020-11-13 | - Added Show/Hide Columns options and included the trait_list.css file | zsloan | |
| which including styling for said options - Changed some column widths to avoid text wrapping | |||
| 2020-11-13 | Added some css to trait_list.css restyling the "show/hide column" | zsloan | |
| buttons when they're active. Not really pleased with the result, but styling a button to look depressed is a pain | |||
| 2020-11-13 | Changed some if/else statements to just initializing the variables + the | zsloan | |
| if statement and fixed "lrs_location" to "location" for target genotypes | |||
| 2020-11-13 | Added cdn imports for fontawesome to correlation page and changed | zsloan | |
| superscript i's to fontawesome icons for the glossary links in column headers | |||
| 2020-11-13 | Replaced superscript i's for glossary links in search result table | zsloan | |
| headers with fontawesome icons | |||
| 2020-11-12 | Import fontawesome css/js and used its info character for glossary links on ↵ | zsloan | |
| search results page | |||
| 2020-11-12 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵ | zsloan | |
| feature/corr_table_changes | |||
| 2020-11-12 | Substituted -log(p) with -logP as mentioned in Rob's e-mail | zsloan | |
| 2020-11-12 | Show Mb positions to 6 decimal places in mapping results table | zsloan | |
| 2020-11-12 | refactor code | Alexanderlacuna | |
| 2020-11-12 | add pep8 fixes in marker_regression/gemma_mapping.py | Alexanderlacuna | |
| 2020-11-12 | add test for parse gemma output in marker_regression/gemma_mapping.py | Alexanderlacuna | |
| 2020-11-12 | modify tests for marker regression | Alexanderlacuna | |
| 2020-11-11 | add tests for marker_regression/rqtl_mapping.py | Alexanderlacuna | |
| 2020-11-11 | add tests for marker_regression/qtlreaper_mapping.py | Alexanderlacuna | |
| 2020-11-11 | add tests for marker_regression/run_mapping.py | Alexanderlacuna | |
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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