| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-04-30 | Revert "Create constructors for encoding and decoding a token." | Munyoki Kilyungi | |
| This reverts commit e7a3bf22da1b63a01343f2cd30cd13c234fe508c. | |||
| 2024-04-30 | Make returning an json object from oauth2_get optional. | Munyoki Kilyungi | |
| * gn2/wqflask/oauth2/client.py (oauth2_get): Add a jsonify_p key word that defaults to False. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Remove unused imports. | Munyoki Kilyungi | |
| * gn2/wqflask/edit.py: Delete subprocess, Paht, Either, Left, Right. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Delete __run__cmd__. | Munyoki Kilyungi | |
| * gn2/wqflask/edit.py (__run_cmd__): Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Remove methods for fetching a dataset's metadata edit history. | Munyoki Kilyungi | |
| * gn2/wqflask/edit.py (__fetch_dataset_git_history__): Delete (view_history): Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Delete function for saving metadata. | Munyoki Kilyungi | |
| * gn2/wqflask/edit.py (save_dataset_metadata): Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Create a JWT to pass in secinfo to a GN3 editing endpoint. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Create constructors for encoding and decoding a token. | Munyoki Kilyungi | |
| * gn2/tests/unit/wqflask/oauth2/(__init__.py, test_tokens.py): Test cases for jwt token creation. * gn2/wqflask/oauth2/tokens.py (JWTToken): New module for creating jwt tokens. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-25 | Merge pull request #841 from genenetwork/feature/implement-new-qnqa-ui-template | Alexander Kabui | |
| Feature/implement new qnqa UI template | |||
| 2024-04-24 | Bug: use dict object on Response object. | Frederick Muriuki Muriithi | |
| 2024-04-24 | Fetch message for authlib errors. | Frederick Muriuki Muriithi | |
| 2024-04-24 | Send assertion as a string, not bytes. | Frederick Muriuki Muriithi | |
| 2024-04-24 | Provide a way to pass extra arguments to gunicorn | Frederick Muriuki Muriithi | |
| 2024-04-24 | Use app's logger rather than root logger. | Frederick Muriuki Muriithi | |
| 2024-04-24 | DEBUG: log out request details | Frederick Muriuki Muriithi | |
| There is a failure on CI/CD that is not obvious - the logs should help with debugging the issue. | |||
| 2024-04-24 | Setup logging | Frederick Muriuki Muriithi | |
| Add logging to genenetwork2 | |||
| 2024-04-23 | Create an endpoint for gnqa test template | Alexander_Kabui | |
| 2024-04-23 | Add implementation for new gnqa template. | Alexander_Kabui | |
| * This is a separate interface from gnqa main page for testing. | |||
| 2024-04-23 | Implementation for gnqa chatbox ui | Alexander_Kabui | |
| 2024-04-23 | Add reimplementation for gnqa error page | Alexander_Kabui | |
| 2024-04-23 | Don't fail startup due to missing config. | Frederick Muriuki Muriithi | |
| 2024-04-23 | Separate the auth server's public key from app's private key | Frederick Muriuki Muriithi | |
| * Use the app's private key to sign the initial assertions used for retrieving an authorisation token from the auth server. * Use auth server's public key to validate the authorisation tokens got from the auth server. | |||
| 2024-04-23 | Generate assertions to be used to get the token from the auth server | Frederick Muriuki Muriithi | |
| 2024-04-23 | Client needs access to PRIVATE KEY, not PUBLIC KEY. | Frederick Muriuki Muriithi | |
| 2024-04-23 | Use the JWT Bearer grant type | Frederick Muriuki Muriithi | |
| 2024-04-23 | SSL_KEY_PAIR_PUBLIC_KEY: New setting | Frederick Muriuki Muriithi | |
| Define a new setting named SSL_KEY_PAIR_PUBLIC_KEY to hold the path to the SSL key-pair's public key, used with the JWTs. | |||
| 2024-04-22 | Change haplotype analyst color scheme | zsloan | |
| 2024-04-16 | Import missing symbol. | Frederick Muriuki Muriithi | |
| 2024-04-11 | Merge pull request #838 from genenetwork/feature/refactor-gnqa-ui | Alexander Kabui | |
| Feature/refactor gnqa UI | |||
| 2024-04-05 | Delete redundant UI codebase. | Alexander_Kabui | |
| 2024-04-05 | Use bootstrap classes for ui. | Alexander_Kabui | |
| 2024-04-05 | Refactor gnqa history endpoint. | Alexander_Kabui | |
| * require gn-auth | |||
| 2024-04-05 | Add get history fetch url on gnqa homepage. | Alexander_Kabui | |
| 2024-04-05 | Add gnqa history search page. | Alexander_Kabui | |
| 2024-04-05 | Update UI for gnqa rating to use htmx. | Alexander_Kabui | |
| 2024-04-05 | Update gnqa rating route. | Alexander_Kabui | |
| 2024-04-03 | Add pubmed info and styling | Alexander_Kabui | |
| 2024-04-02 | Display a history page containing all the edits. | Munyoki Kilyungi | |
| * gn2/wqflask/edit.py (__fetch_dataset_git_history__): New function. (view_history): New end-point. * gn2/wqflask/templates/dataset.html: Use htmx to fetch history. * gn2/wqflask/templates/dataset_history.html: New history page. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-02 | Use the dataset id to fetch the authorisation roles. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-02 | Load the edit page on the same page using HTMX. | Munyoki Kilyungi | |
| * gn2/wqflask/templates/dataset.html: Delete target="_blank" for the edit links. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-02 | Properly chain all the git and write operations together. | Munyoki Kilyungi | |
| * gn2/wqflask/edit.py (save_dataset_metadata): Chain running the git commands and the write operation together. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-02 | Refactor __run_cmd into private function __run_cmd__. | Munyoki Kilyungi | |
| * gn2/wqflask/edit.py: Import Right. Delete curry. (save_dataset_metadata)[__run_cmd]: Move this... (__run_cmd__): ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-02 | Add a "View History" link. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-03-27 | Add some styling to gnqa answer page. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> | |||
| 2024-03-27 | Fix htmx swap. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> | |||
| 2024-03-27 | Delete unused javascript in gnqa page. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> | |||
| 2024-03-27 | Add missing braces/brackets. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> | |||
| 2024-03-27 | Enable auto-complete in form. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> | |||
| 2024-03-27 | Clean up gnqa answer page. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> | |||
| 2024-03-27 | Delete unused template. | Munyoki Kilyungi | |
| * gn2/wqflask/templates/pubmed_modal.html: Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> | |||
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