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2021-08-03wqflask: views: Show diff files for the adminBonfaceKilz
* wqflask/wqflask/views.py (display_diffs_admin): New function. * wqflask/wqflask/templates/display_files.html: New template to show the diffs.
2021-08-03wqflask: views: Process file_csv if provided and get the diffBonfaceKilz
* wqflask/wqflask/views.py (update_phenotype): If a file is provided in the request, get the diff and store it in a data escrow.
2021-08-03wqflask: views: Remove un-necessary comment "#" sequenceBonfaceKilz
2021-08-03wqflask: views: Edit end-point to use the phenotype-idBonfaceKilz
squash! wqflask: views: Edit end-point to use the phenotype-id
2021-08-03wqflask: views: Add endpoint for getting the csv dataBonfaceKilz
2021-07-23minor fixes for test_correlation_page table columnsAlexander Kabui
2021-07-23set compute_all for test_compute to TrueAlexander Kabui
2021-07-23handle missing tissue input dataAlexander Kabui
2021-07-13Fixed corr_coeffient to corr_coefficientzsloan
2021-07-12Encode user_id as bytestring if not already bytestring to account for some ↵zsloan
user_ids being stored as different encoding
2021-07-12Merge pull request #590 from Alexanderlacuna/bugfix/rpy2-tissue-broken-linksBonfaceKilz
replace rpy2 for tissue correlation
2021-07-12fix merge conflictAlexander Kabui
2021-07-12tests: test_markdown_routes: Remove stubbed out testsBonfaceKilz
2021-07-12templates: show_trait_details: Show edit buttons conditionallyBonfaceKilz
* wqflask/wqflask/templates/show_trait_details.html: Check the data type, and load different edit buttons.
2021-07-12wqflask: views: Add route for updating the probesetBonfaceKilz
2021-07-12templates: edit_probeset: Add template for editing probeset dataBonfaceKilz
* wqflask/wqflask/templates/edit_probeset.html: New file(template).
2021-07-12wqflask: views: Add extra route showing probeset editing formBonfaceKilz
* wqflask/wqflask/views.py (edit_probeset): New function/ route.
2021-07-12wqflask: views: Rename endpoint for editing a traitBonfaceKilz
* wqflask/wqflask/views.py (edit_trait): Rename to edit_phenotype. Also rename the endpoint to "/trait/<name>/edit/inbredset-id/<inbred_set_id>" to indicate that and inbredset-id is required. This endpoint will be only used for phenotypes. Finally, render the "edit_phenotype.html" template (update_trait): Rename to update_phenotype. Also, remove hard-coded redirect, and replace it with the correct values. * wqflask/wqflask/templates/edit_trait.html: Rename to edit_phenotype.html
2021-07-09Merge pull request #587 from zsloan/feature/use_gn3_for_correlationszsloan
Feature/use gn3 for correlations
2021-07-09Merge branch 'testing' into feature/use_gn3_for_correlationszsloan
2021-07-09Remove commented out function do_bicorzsloan
2021-07-09Only show literature and tissue correlation options if the trait's dataset ↵zsloan
is type ProbeSet
2021-07-09Changed compute_corr_for_top_results to also do sample correlation when ↵zsloan
literature or tissue correlation are selected
2021-07-06replace rpy2 for tissue corrAlexander Kabui
2021-07-06fix gn2 linksAlexander Kabui
2021-07-03Increased width of mapping options div and covariates windowzsloan
2021-07-01Merge pull request #589 from zsloan/bug/fix_zoomed_mapping_scalingzsloan
Bug/fix zoomed mapping scaling
2021-07-01Fixed issue with suggestive/significant lines extending beyond figure edge + ↵zsloan
fixed a couple issues with the last commit
2021-07-01Fixed issue where the interval map QTL line might extend beyond the graph ↵zsloan
edge when zoomed into a Mb range + removed some commented out code
2021-07-01Fixed issue where zooming into chromosome 1 was causing the Y axis scaling ↵zsloan
to be bad
2021-07-01Fixed bug where there'd be an error if the max boot count is 0 for a chromosomezsloan
2021-06-28Added doc for creating guix profile, written by Bonfacezsloan
2021-06-21Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-06-21Merge pull request #588 from zsloan/feature/add_scroller_to_mapping_resultszsloan
Feature/add scroller to mapping results
2021-06-18Changed limit from 2000 markers to 10000 markers for the number to show in ↵zsloan
mapping results table
2021-06-18Added Scroller to mapping results tablezsloan
2021-06-18Re-enable bicor as an option in the trait page templateezsloan
2021-06-18Reenable PCA for correlation matrixzsloan
2021-06-18Re-enable bicor for correlations and fix issue where ro.Vector needed to be ↵zsloan
changed to ro.FloatVector
2021-06-17The listserv link was marked as broken but is working, so I made it a link ↵zsloan
again, but the IRC channel link is broken so I marked it as broken
2021-06-17UCSC Genome Browser link was marked as a broken link, but it apparently ↵zsloan
works now so I added it back as a link
2021-06-17Only show all-numerical attributes in the 'Filter samples by value' drop-downzsloan
2021-06-17Added function for getting list of attributes with all numerical values ↵zsloan
(that can be used with the 'Filter by value' feature)
2021-06-17Fixed issue that caused filtering by attribute values to not work if ↵zsloan
attribute values didn't exist for some samples
2021-06-17doc: rpy2-performance: Add a section exploring possible solutionsBonfaceKilz
2021-06-17docs: rpy2-performance: Indicate version of python-rpy2 being usedBonfaceKilz
2021-06-17doc: rpy2-performance: Replace begin_export with begin_srcBonfaceKilz
2021-06-17delete loggers and commentsAlexander Kabui
2021-06-17add f1list and parlist to primary_samplesAlexander Kabui
2021-06-17minor refactoringAlexander Kabui
generated by cgit v1.2.3 (git 2.44.0) at 2024-10-20 05:50:24 +0000