index
:
genenetwork2
acenteno
authentication_test
blatseq_fix
chores/code-refactoring
chores/lmdb-integration
chores/replace-cdns
chores/script-textfile-generator
correlations-return-fewer-results
debug-too-many-connections-error
decouple_tools_and_wqflask_app
development
epysode
feature/search-history
feature/textfile-generator
gn-master
guix-shell
hook-up-auth-to-traits-page
itp_covariate_testing
jupyter_notebooks_ui
lmdb-code/refactoring
master
notebooks_api
oauth2-migrate-user-details-and-data
partial-correlations
partial_corr_ui_rework
pcorrs_targets
penguin2
phewas
production
proxy-integration
refactor-configurations
refactor-data_set_py-20220920
revert-366-360_update_htmlgen
rework-genotype-linking
run-corrs-in-external-process
stable
testing
GeneNetwork (2nd generation)
about
summary
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Author
2019-02-04
Changed the way the table is drawn for the search pages so that it can show w...
zsloan
2019-01-22
Fixed issue where Haplotype Analyst in mapping results would always show resu...
zsloan
2019-01-17
Redid gene global search to take JSON data input instead of converting an HTM...
zsloan
2019-01-16
Pushing SNP browser updates
zsloan
2019-01-11
Got InDel working for Variant Browser
zsloan
2018-12-21
Fixed collections so they can be very large (1000+ traits)
zsloan
2018-12-05
Fixed Verify link
zsloan
2018-12-05
Fixed issue where SNP track for mapping did not appear correctly
zsloan
2018-11-20
Added option to select chromosome from trait page when mapping
zsloan
2018-11-13
Changed trait sample table appearance to be more compact
zsloan
2018-11-12
Added change to remove qtlreaper use from correlation and prevent the inconsi...
zsloan
2018-11-05
Fixed quantile normalization issue
zsloan
2018-11-04
Fixed one more thing
zsloan
2018-11-04
Quick fix to issue where GEMMA wouldn't be run simultaneously on traits from ...
zsloan
2018-11-02
Minor fix since sometimes number of samples with values wasn't counted correctly
zsloan
2018-11-02
Committing some changes that get non-LOCO GEMMA mapping working without using...
zsloan
2018-11-01
Updated the way snpbrowser initializes parameters, in preparation for drawing...
zsloan
2018-10-24
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing
zsloan
2018-10-24
- SNP Browser is mostly complete; just need to test more and add SNP density ...
zsloan
2018-10-15
Added "as root" for instructions on running ES
zsloan
2018-10-15
Updated instructions for running elasticsearch
zsloan
2018-10-12
Fixed issue that caused error when mapping single-chromosome, since a second ...
zsloan
2018-10-12
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into gn-testing
Pjotr Prins
2018-10-11
- Added fix for GEMMA LOCO
zsloan
2018-10-01
Missed something when previously resolving the merge conflict
zsloan
2018-10-01
Resolved conflict
zsloan
2018-10-01
- Can now remove cofactors from correlation scatterplot and select them by ju...
zsloan
2018-09-17
Merge pull request #342 from pjotrp/gemma-20180915
zsloan
2018-09-15
Run gemma without debug and checks in production
Pjotr Prins
2018-09-15
ES comment
Pjotr Prins
2018-09-15
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing
Pjotr Prins
2018-09-15
Run gemma without debug and checks in production
Pjotr Prins
2018-08-23
Added "change user to elasticsearch"
zsloan
2018-08-15
The issue with adding anonymous collections should be fixed now
zsloan
2018-08-15
ES comment
Pjotr Prins
2018-08-14
Fixed minor issue in user_manager.py
zsloan
2018-08-14
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing
zsloan
2018-08-14
Added cofactors to correlation scatterplot and changed it to use Plotly
zsloan
2018-08-10
Added the command needed to start up elasticsearch
zsloan
2018-07-06
Added square root transform options
zsloan
2018-07-02
Added option to transform/normalize trait sample values (log2 and qnorm) on t...
zsloan
2018-06-08
Added option to add traits to existing collection, which I had forgotten prev...
zsloan
2018-06-08
User collections (now stored in ElasticSearch) are reimplemented now and shou...
zsloan
2018-05-25
Fixed issue causing anonymous collections to not work on my branch and stagin...
zsloan
2018-05-17
Added script to quantile normalize a data set and enter its normalized sample...
zsloan
2018-05-01
Merge /home/lei/gene into testing
zsloan
2018-05-01
Removed all code related to using GEMMA with PLINK input files
zsloan
2018-04-27
Added marker filtering for data set groups with larger genotype files
zsloan
2018-04-23
Changed GEMMA mapping to use -lmm 2 (Likelihood ratio test) as a parameter in...
zsloan
2018-04-19
Changed width of top bar and a couple other html objects to 100% instead of s...
zsloan
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