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2021-04-29templates: edit_trait.html: Add comment headersBonfaceKilz
The comment headers mark different sections.
2021-04-29wqflask: views: Add new function for selecting a datasetBonfaceKilz
* wqflask/wqflask/views.py(edit_trait_page): New function.
2021-04-29templates: edit_trait.html: New fileBonfaceKilz
Copy of submit_trait.html. This is a copy; that'll form the basis of the new edit page.
2021-04-29wqflask: views: Replace dict de-structuring with kw argumentsBonfaceKilz
* wqflask/wqflask/views.py (submit_trait_form): Use kw arguments when passing variables to the template. This is more readable.
2021-04-28Merge pull request #568 from zsloan/bug/fix_gemma_temptrait_covariateszsloan
Fix the way temp traits are displayed when selecting covariates from a collection
2021-04-28Added something to jsonable in trait.py to account for temp traits (this is ↵zsloan
necessary for them to show up correctly when selecting traits from collections in pop-up windows, like when selecting cofactors for mapping)
2021-04-28Merge pull request #567 from zsloan/bug/fix_gemma_temptrait_covariateszsloan
Account for temp traits when adding covariates with GEMMA mapping
2021-04-28Account for temp traits when adding covariates with GEMMA mappingzsloan
2021-04-28wqflask: views: Delete stale commentsBonfaceKilz
2021-04-28wqflask: views: Apply pep-8BonfaceKilz
2021-04-28Use right block level commentsBonfaceKilz
2021-04-28Remove stale commentsBonfaceKilz
2021-04-28Remove local variables that are unusedBonfaceKilz
2021-04-28wqflask: views: Remove news importBonfaceKilz
This name clashes with "def news" which is defined later.
2021-04-28wqflask: views.py: Clean up imports sectionBonfaceKilz
Remove unused imports and break up long imports into shorter lines.
2021-04-27Convert to array and transpose R/qtl scanone results when not using ↵zsloan
cofactors. For some reason the rows/columns are inverted when converted to a python object when doing scanone with cofactors vs without cofactors
2021-04-27Randomized cross object filename, since I think it throws an error if the ↵zsloan
same file is being written to simultaneously (or being written to while it's being read)
2021-04-27Stopped using the scanone function pointer when doing R/qtl mapping, since ↵zsloan
the results are not converted into a Python object in a way that preserves marker names (which is important because pseudomarkers can be added) Instead the marker names are extracted from the scanone results using R immediately after they're generated, and then passed to process_rqtl_results
2021-04-27templates: submit_trait.html: Add field for inputting trait nameBonfaceKilz
2021-04-23Remove stale commentsBonfaceKilz
2021-04-23Apply PEP-8BonfaceKilz
2021-04-23Rewrite For Loop in a more Pythonic wayBonfaceKilz
2021-04-23Rename index_page_orig to index_pageBonfaceKilz
2021-04-23Add full link to genetic data collected as part of WebQTL projectBonfaceKilz
2021-04-23Move looped sql query into one statement in "get_species_groups"BonfaceKilz
It's in-efficient to have a sql query executed in a loop. As data grows, the query becomes slower. It's better to let sql handle such queries.
2021-04-23Remove stale commentsBonfaceKilz
2021-04-22Account for situations where the trait symbol is null for ProbeSet traits; ↵zsloan
previously it could throw an error
2021-04-22Added JS that sets the 'add to collection' dropdown to default to the ↵zsloan
collection the use set as their default collection
2021-04-19Specify only getting the first two items after splitting the trait/dataset ↵zsloan
input string
2021-04-19Removedu nused function from network_graph.pyzsloan
2021-04-19Removed commented out js filezsloan
2021-04-19Fixed NIAAA link because apparently it was changedzsloan
2021-04-19Removed unused codezsloan
2021-04-14Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-04-14Added JS that automatically selects the default collection if it's setzsloan
2021-04-14Added option to set default collection to collections/view.htmlzsloan
2021-04-13SQL notes - table layoutPjotr Prins
2021-04-13SQL notes - table layoutPjotr Prins
2021-04-13SQL notesPjotr Prins
2021-04-13SQL notesPjotr Prins
2021-04-09Merge branch 'testing' of github.com:genenetwork/genenetwork2 into acentenoArthur Centeno
2021-04-09link to webinarsArthur Centeno
2021-04-09Changed connditional in show_trait.js to check categorical_attr_exists ↵zsloan
instead of just checking if there are case attributes
2021-04-09Replaced the conditional for whether to show 'Block samples by group' to ↵zsloan
instead check categorical_attr_exists
2021-04-09Store categorical_attr_exists as a string instead of boolean since ↵zsloan
apparently the boolean doesn't get passed to the template properly
2021-04-09Added varaiable 'categorical_attr_exists' tracking whether there are any ↵zsloan
case attributes with fewer than 10 distinct values, since it currently throws a JS error if case attributes exist but none have fewer than 10 distinct values (specifically when we have RRID as a case attribute)
2021-03-30Shifted some code out of the try/except that shouldn't have been inside itzsloan
2021-03-30Shifted the 'try' in a try/except up some to account for a possible error ↵zsloan
with calculating PCA that I don't know the cause of yet
2021-03-29Changed minimum num_overlap to 2, since there apparently need to be that ↵zsloan
many shared samples torun scipy.stats.pearsonr/spearmanr
2021-03-29Check if a trait in a collection is a properly structured string to avoid an ↵zsloan
error caused by an empty string be stored in a collection's trait list
generated by cgit v1.2.3 (git 2.44.0) at 2024-10-20 18:44:54 +0000