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2018-03-22Fix 'def' statementMuriithi Frederick Muriuki
* End the 'def' statement with a colon (:) * Add an empty line between lines at different indentation levels for clarity.
2018-03-21Deactivate navigation testsMuriithi Frederick Muriuki
* Navigation depends on Javascript to render the elements being tested. That would require selenium and its ilk to run such tests, meaning such packages would need to be defined for Guix first.
2018-03-19Initialise navigation tests.Muriithi Frederick Muriuki
* Start working on navigation tests.
2018-03-19* Add mapping tests. Fix link-checker tests.Muriithi Frederick Muriuki
* Add tests for the R/qtl and CIM mapping tools. * Fix tests for in-page links.
2018-03-18Initialise mapping testsMuriithi Frederick Muriuki
* Add mapping tests, and build the first of the tests.
2018-03-18Move import to the top of the page.Muriithi Frederick Muriuki
* Mainly to tell the dependencies easily.
2018-03-18Check that key exists before using itMuriithi Frederick Muriuki
* Ensure the key exists in the json object/dictionary, before trying to use it to retrieve a value.
2018-03-14Add tests for main web functionalityMuriithi Frederick Muriuki
2018-03-12Add tests to check links.Muriithi Frederick Muriuki
2018-03-09Add link_checker moduleMuriithi Frederick Muriuki
* Add the module that will hold the code to test the links on the system.
2018-03-09Use argparse to handle argumentsMuriithi Frederick Muriuki
* Use argparse to handle commandline arguments. * Create initial layout of how the code might end up - lots of the code is currently commented out.
2018-02-23Add tests to check that the UI is setup correctlyMuriithi Frederick Muriuki
* Check that the links for OAuth2 logins via ORCID and GitHub are setup correctly.
2018-02-23Provide connections to elasticsearchMuriithi Frederick Muriuki
* Provide connections to elasticsearch at various points in the code. These oversight was caught while running tests.
2018-02-23Add new tests for orcid loginsMuriithi Frederick Muriuki
2018-02-23Add new test for github loginsMuriithi Frederick Muriuki
2018-02-23Remove failing codeMuriithi Frederick Muriuki
* With the parameterized module, the testcase cannot be run independently at this time.
2018-02-21Simplify test. Check for content, rather than urlMuriithi Frederick Muriuki
* The test functions were very similar, so this commit refactors out the common test code to a single method, and passes in the data to the test using the parameterized package. * Check that the page content after a login attempt is the expected content, rather than checking the url.
2018-02-21Fix assumption of existing collectionMuriithi Frederick Muriuki
* When logging in, if a user selects "Import existing collections", the system would throw an exception, since Redis would return a NoneType, which would then be accessed by json.loads(), which doesn't seem to know how to process that. This fixes that, by providing a string representing an empty json array ("[]"), in place of the NoneType.
2018-02-19Add more login tests.Muriithi Frederick Muriuki
2018-02-19Add a runner for all integration tests.Muriithi Frederick Muriuki
2018-02-19Add test for local loginMuriithi Frederick Muriuki
* Add an integration test to test that the login process for users registered locally to genenetwork2 works as expected.
2018-02-19Create parametrized superclass for testsMuriithi Frederick Muriuki
* Since the tests require that some parameters be provided while running the tests, create a class that helps abstract away the details of retrieving and setting the expected parameters.
2018-02-19Rename file and move common codeMuriithi Frederick Muriuki
* Rename the file to make it an importable module * Refactor the test to move common code out to a super class.
2018-02-16Add registration testMuriithi Frederick Muriuki
* Add integration test to check the registration process.
2018-02-16Merge branch 'pjotrp-gn-testing-es' into testingMuriithi Frederick Muriuki
2018-02-15Requests addedPjotr Prins
2018-02-15Added unittest examplePjotr Prins
2018-02-15Fixing authentication stuff so it uses parameters properly. Also no ↵Pjotr Prins
PYTHONPATH needed as it is now in the Guix build.
2018-02-15Fix conflictPjotr Prins
2018-02-13Add tests for Registration process.Muriithi Frederick Muriuki
2018-02-13Update module to make it more testableMuriithi Frederick Muriuki
* Update functions to make them more testable. * Update code using updated functions.
2018-02-13@zsloan: we should introduce full parameter checking and sensible defaults ↵Pjotr Prins
for every page we work on. It will help bug tracking. Probably fixes #279
2018-02-12Merge pull request #277 from pjotrp/gn-productionzsloan
Gn production
2018-02-11Added gunicorn pid so we can not run twicePjotr Prins
2018-02-11Using eventlet workerszsloan
2018-02-10Fix env variable $GEMMA_WRAPPER_COMMANDPjotr Prins
2018-02-10Fixing GEMMA LOCOPjotr Prins
2018-02-10Fixed finding PATHs - one return statement!Pjotr Prins
2018-02-10Check for bimbam path and bail out if it is missingPjotr Prins
2018-02-09Check elasticsearch at point of useMuriithi Frederick Muriuki
* Instead of checking for the state of elasticsearch at startup, check the state at the moment the user requests a feature that depends on elasticsearch. This reduces the chances that the user is dropped onto an exception page when elasticsearch server goes down.
2018-02-09Add check for elasticsearchMuriithi Frederick Muriuki
* Add some extra checks to ensure that elasticsearch is running before presenting the UI to the user.
2018-02-05Add code to allow user to change passwordMuriithi Frederick Muriuki
* After the email is sent to the user, there is need to provide a way for the user to actually change their password, and have the results saved.
2018-02-05Refactor common items to more generic methods.Muriithi Frederick Muriuki
* Refactor code that can be used in more than one place to a more generic method/function that's called by other methods
2018-02-05Send emails for forgotten passwordsMuriithi Frederick Muriuki
* Update the code so that it sends out emails for the "forgot password" feature.
2018-02-05Add SMTP configuration variablesMuriithi Frederick Muriuki
* Add configuration variables to enable the system connect to the configured SMTP server to send out emails.
2018-02-05Check each part of the PYTHONPATHMuriithi Frederick Muriuki
* PYTHONPATH may be composed of multiple locations in the filesystem, thus the need to test that each location exists and is a directory.
2018-02-05Merge remote-tracking branch 'origin/testing' into testingMuriithi Frederick Muriuki
2018-01-31Merge pull request #275 from pjotrp/pjotrzsloan
Added cli swith and set timeout to 3 minutes for gunicorn-dev mode
2018-01-31Startup: longer timeout for gunicorn-dev modePjotr Prins
2018-01-31Startup: added -cli optionPjotr Prins
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