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2023-02-17Default trait abbreviation to N/A and only set to pre/post_publication_abbrev...zsloan
2023-02-14Fix collection page error when ProbeSet/Publish traits don't have a meanzsloan
2023-02-13Enable mapping compute buttons and change text back to Compute after tables h...zsloan
2023-02-13Initially disable mapping compute buttons + change their text to Loadingzsloan
2023-02-10oauth2: data: Start on UI for linking data to groups.Frederick Muriuki Muriithi
2023-02-09oauth2: groups: Reject join requests....Add handler for rejecting user join requests. Fix a number of minor UI bugs. Frederick Muriuki Muriithi
2023-02-09oauth2: fix variable name. Fetch join requests if there's no group.Frederick Muriuki Muriithi
2023-02-09oauth2: Remove create/join options with active request...If a user has an active join request, then do not provide them with the option to create a new group, or even to request to join another group. Frederick Muriuki Muriithi
2023-02-09oauth2: reorganise the endpoints.Frederick Muriuki Muriithi
2023-02-08oauth2: groups: Handle join requests.Frederick Muriuki Muriithi
2023-02-07oauth2: groups: Enable user to request to be added to group.Frederick Muriuki Muriithi
2023-02-06oauth2: resources: View resource. Handle creation error/success...* Handle the resource creation success or error in a better way than simply dropping the user to a plaintext/json results page. * Enable viewing a particular resource's details. Frederick Muriuki Muriithi
2023-02-03oauth2: resource: implement incomplete resource creation flowFrederick Muriuki Muriithi
2023-02-03Add perf scripts that compare fetching a trait using GN API vs LMDB...* scripts/performance/(README,org, timeit_gn2.py, timeit_lmdb.py): New files. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-02-02oauth2: Update endpoints to the API server...The endpoints to the GN3 API server changed in a recent update, necessitating this commit to update the endpoints. Frederick Muriuki Muriithi
2023-01-31oauth2: Display members in groups page. Rework UI.Frederick Muriuki Muriithi
2023-01-31oauth2: Fix bugs with group creation. Rename functions....Fix some bugs with group creation, mainly correctiong the urls. Rename importable functions to remove the double underscores. Frederick Muriuki Muriithi
2023-01-31oauth2: remove obsolete function.Frederick Muriuki Muriithi
2023-01-30oauth2: update urlFrederick Muriuki Muriithi
2023-01-30oauth2: fix errors.Frederick Muriuki Muriithi
2023-01-30oauth2: Fix missing imports and update URLsFrederick Muriuki Muriithi
2023-01-30oauth2: Fix missing import.Frederick Muriuki Muriithi
2023-01-30 oauth2: Add placeholder endpoints and UI elements...Add some endpoints and UI elements to act as placeholders for yet to be implemented functionality. Frederick Muriuki Muriithi
2023-01-30oauth2: Display user's group information.Frederick Muriuki Muriithi
2023-01-30oauth2: split out code into separate modules...To ease development and maintenance, split the code into separate modules, nesting the blueprints for a more modular feel. Frederick Muriuki Muriithi
2023-01-28mechanical-rob: unescape html entities.Frederick Muriuki Muriithi
2023-01-28oauth2: List the user roles. View a particular role's details.Frederick Muriuki Muriithi
2023-01-26Dump metadata in addition to sample data....* scripts/sampledata: Dump metadata in addition to data. Munyoki Kilyungi
2023-01-26oauth2: UI: Rework user dashboard UI...Separate the roles, resources and group information from the overview page. Frederick Muriuki Muriithi
2023-01-25mechanical-rob: corrs: Activate tests. Print out whitespace...* Activate the correlation correctness tests * Print out whitespace characters in such a form that allows visual comparison of differences to help with fixing issues caught by tests. Frederick Muriuki Muriithi
2023-01-25mechanical-rob: move newlineFrederick Muriuki Muriithi
2023-01-25mechanical-rob: Fix bugs with corrs test...* Replace CRLF in html output with newline to prevent equality comparisons from failing if that's the only difference. * Only include failures that have actual content: filter out empty failure items * Print out an extra newline on completion of checks Frederick Muriuki Muriithi
2023-01-24mechanical-rob: update corrs tests and clean up dataFrederick Muriuki Muriithi
2023-01-24scripts: Provide help info for script.Frederick Muriuki Muriithi
2023-01-24correlations: Escape strings for html...Improves upon commit 63aff5ca22cfb5caaa38ac1d737afa48fc8dbf02 Frederick Muriuki Muriithi
2023-01-24mechanical-rob: eliminate extraneous spaces before comparisonsFrederick Muriuki Muriithi
2023-01-23oauth2: create group...Enable creation of a new group. Frederick Muriuki Muriithi
2023-01-23oauth2: Retain email input, and "next uri" on error...Retain the "next uri" and the email the user had input in the case of an error, so that the user has the chance to correct their input, and still get to the uri they originally intended to (on success). Frederick Muriuki Muriithi
2023-01-21oauth2: Cleanup fetching of roles and groups. Update template.Frederick Muriuki Muriithi
2023-01-20Make dump script faster by using concurrency moduleMunyoki Kilyungi
2023-01-20Dump all sample data into a given directory...* scripts/sampledata.py: Import gen_dropdown_json. (main): Dump all the sample data from all the datasets into a given directory. Munyoki Kilyungi
2023-01-20Return a trait's display name if the name is non-existent...* scripts/sampledata.py (fetch_all_traits): Should the name of a trait not exists, e.g. in probeset data, return it's display name. Munyoki Kilyungi
2023-01-20Update demo to dump entire dataset for BXDPublish...* scripts/sampledata.py: Import os and sys. <__name__>: Add demo to dump "BXDPublish" dataset. Munyoki Kilyungi
2023-01-20Remove hard-coded values...* scripts/sampledata.py (dump_sample_data): Remove hard-coded values for trait_id and dataset_name. Munyoki Kilyungi
2023-01-20Fix typoMunyoki Kilyungi
2023-01-20Add example that demos dumping data from an entire datasetMunyoki Kilyungi
2023-01-20Add a function that fetches all the traits given the right params...* scripts/sampledata.py (fetch_all_traits): New function. Munyoki Kilyungi
2023-01-20Create script to dumple sample data given the dataset and trait id...* scripts/sampledata.py: New file. Munyoki Kilyungi
2023-01-20oauth2: Add user-profile template and dummy endpoints...* wqflask/wqflask/oauth2/routes.py: add some dummy endpoints to be fleshed out * wqflask/wqflask/templates/oauth2/view-user.html: Add missing template for the /user-profile endpoint Frederick Muriuki Muriithi
2023-01-20oauth2: Revoke token on logout...If a user logs out of the session, and their token is not revoked, if their token were to leak somehow, then an attacker could use it before it expired. Explicit revocation of the token helps avoid that. Frederick Muriuki Muriithi