| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2023-11-27 | Point htmx to the correct endpoint for dataset search. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Use correct src for htmx. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Improve search-box styling. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Update the lead and place-holder copy for dataset search. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Improve the dataset's styling. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Refactor template to use new json-ld format. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Float the details panel only when metadata exists. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Refactor route and metadata retrieval process for dataset details. | Munyoki Kilyungi | |
| * wqflask/wqflask/views.py (get_dataset): Rename "/dataset..." -> "/datasets...". Remove url parsing for metadata keys since we use json-ld now. Remove pull-right check. Only pass the metadata to the template. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Add search bar if a there's a URL miss when displaying data. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Make dataset it's own html entity. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Get the last element from url in the key. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Rename metadata to dataset. | Munyoki Kilyungi | |
| * wqflask/wqflask/templates/metadata/dataset.html: Rename metadata to dataset. * wqflask/wqflask/views.py (get_dataset): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Use correct fields when fetching a dataset's metadata. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Move dataset template to metadata directory. | Munyoki Kilyungi | |
| * wqflask/wqflask/templates/dataset.html: Move this ... * wqflask/wqflask/templates/metadata/dataset.html: here. Also, add htmx library. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-27 | Delete dead comment. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-25 | Fix bug caused by NaN p-values in GEMMA mapping | zsloan | |
| 2023-11-17 | Log out query errors | Frederick Muriuki Muriithi | |
| Log out failures in querying the database as errors to help with catching issues with and debugging of queries. | |||
| 2023-11-13 | Fix bug that caused hitting Enter on regular search after hitting Enter for ↵ | zsloan | |
| global search to wrongly submit global search instead | |||
| 2023-11-13 | Secrets: Enable separate secrets settings file | Frederick Muriuki Muriithi | |
| Enable a separate secrets settings file to be provided where necessary. The secrets settings file will hold security-critical configuration values that should not be exposed in the repository. | |||
| 2023-11-11 | DB docs | Pjotr Prins | |
| 2023-11-09 | Set correlation table width to 90% | zsloan | |
| 2023-11-09 | Make adjustments to correlation table | zsloan | |
| - Disable scroller when fewer than 2000 rows. Scroller causes a problem where you can't reach certain rows when manually scroller when rows are too 'tall' (so when descriptions are long and the window is smaller) - Disable width for Abbreviation and increase width for Peak Position so it doesn't get pushed to two lines | |||
| 2023-11-06 | Use correct prefix for auth server's url. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-06 | Revert "Disable SSL check when checking whether user is logged in." | Munyoki Kilyungi | |
| This reverts commit b178e8f8944141632032103fb5b06e3a0746d4f3. | |||
| 2023-11-06 | Disable SSL check when checking whether user is logged in. | Munyoki Kilyungi | |
| * wqflask/wqflask/views.py (index_page): Set "verify=False" in no_token_get. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-06 | Get full trace of SSL error and reduce number of retries in MR. | Munyoki Kilyungi | |
| * test/requests/test-website.py (host_is_online): Reduce tries from 10 to 5. Also, print out the full error---useful for CD debugging. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-06 | Use latest self-hosted guix-bioinformatics channel. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-06 | Disable SSL check on Mechanical Rob. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-06 | Update the default auth url. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-10-26 | case-attribute: approve/reject diff | Frederick Muriuki Muriithi | |
| Make calls to the API server to approve or reject a diff, depending on the user's actions. Clean up the UI elements to remove debug artifacts. | |||
| 2023-10-26 | case-attributes: View the diffs. | Frederick Muriuki Muriithi | |
| 2023-10-26 | CaseAttribute: List out the diffs | Frederick Muriuki Muriithi | |
| List out the diffs and create placeholders for active elements that do not yet have the back-end code that handles them. | |||
| 2023-10-26 | CaseAttributes: Provide UI for diffs list. | Frederick Muriuki Muriithi | |
| 2023-10-26 | CaseAttribute: Add link to enable editing case attributes. | Frederick Muriuki Muriithi | |
| 2023-10-26 | Rework "success" function. | Frederick Muriuki Muriithi | |
| 2023-10-26 | CaseAttributes: Bug: Fix query. | Frederick Muriuki Muriithi | |
| 2023-10-26 | Fix URL: Make requests to GN3 not gn-auth | Frederick Muriuki Muriithi | |
| Provide a "wrapped" requests module that returns an Either monad rather than a request directly. Send requests to GN3 rather than gn-auth | |||
| 2023-10-26 | Use auth-server for authentication | Frederick Muriuki Muriithi | |
| Authenticate with the Auth-server (gn-auth) to get the token to use on the API server (GN3). | |||
| 2023-10-26 | Call utils to replace unnecessary functions. | Frederick Muriuki Muriithi | |
| 2023-10-26 | Process data before sending to API | Frederick Muriuki Muriithi | |
| 2023-10-26 | UI for case-attribute editing. | Frederick Muriuki Muriithi | |
| 2023-10-26 | Remove references to "group roles". | Frederick Muriuki Muriithi | |
| 2023-10-26 | Update template: remove group from resources | Frederick Muriuki Muriithi | |
| 2023-10-26 | Remove group from resource | Frederick Muriuki Muriithi | |
| A resource is not linked directly to a user group any more. | |||
| 2023-10-26 | Update role view: Add link to resource. | Frederick Muriuki Muriithi | |
| 2023-10-26 | Fetch system roles from new `/auth/system/roles` endpoint. | Frederick Muriuki Muriithi | |
| 2023-10-26 | Use gn-auth as the authorisation server. | Frederick Muriuki Muriithi | |
| 2023-10-25 | Always cache mapping results for a month, even if Copy and Share isn't clicked | zsloan | |
| 2023-10-25 | Remove expiration time when caching mapping inputs | zsloan | |
| 2023-10-24 | Add script for converting the HXBBXH genotype file provided by Hao. | zsloan | |
| Paths and sample/chromosome lists are hard-coded just because this was probably a one-time thing, but still commiting it since it's good to have it around in case we need to use it again | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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